Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09540 and PGA1_c09550 are separated by 331 nucleotides PGA1_c09550 and PGA1_c09560 are separated by 124 nucleotides
PGA1_c09540: PGA1_c09540 - phospho-N-acetylmuramoyl-pentapeptide- transferase MraY, at 978,577 to 979,659
_c09540
PGA1_c09550: PGA1_c09550 - Glutaminase (EC 3.5.1.2) <small>(from data)</small>, at 979,991 to 980,905
_c09550
PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427
_c09560
Position (kb) 979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 979.653 kb on + strand at 979.840 kb on + strand at 979.840 kb on + strand at 979.924 kb on + strand at 979.924 kb on + strand at 979.932 kb on - strand at 979.937 kb on + strand at 979.938 kb on - strand at 979.938 kb on - strand at 980.066 kb on + strand at 980.074 kb on - strand at 980.113 kb on + strand, within PGA1_c09550 at 980.206 kb on - strand, within PGA1_c09550 at 980.238 kb on - strand, within PGA1_c09550 at 980.291 kb on - strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.400 kb on + strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.487 kb on - strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.520 kb on + strand, within PGA1_c09550 at 980.536 kb on + strand, within PGA1_c09550 at 980.544 kb on + strand, within PGA1_c09550 at 980.556 kb on - strand, within PGA1_c09550 at 980.623 kb on - strand, within PGA1_c09550 at 980.635 kb on - strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.719 kb on - strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.753 kb on - strand, within PGA1_c09550 at 980.796 kb on + strand, within PGA1_c09550 at 980.802 kb on + strand, within PGA1_c09550 at 980.810 kb on - strand, within PGA1_c09550 at 980.847 kb on + strand at 980.850 kb on - strand at 980.855 kb on - strand at 980.938 kb on - strand at 981.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 979,653 + +0.7 979,840 + -1.9 979,840 + -0.4 979,924 + -2.9 979,924 + +0.0 979,932 - -0.3 979,937 + -0.3 979,938 - -0.2 979,938 - -3.2 980,066 + +0.0 980,074 - +0.6 980,113 + PGA1_c09550 0.13 -1.0 980,206 - PGA1_c09550 0.23 -1.2 980,238 - PGA1_c09550 0.27 +1.5 980,291 - PGA1_c09550 0.33 +0.1 980,358 + PGA1_c09550 0.40 -0.4 980,358 + PGA1_c09550 0.40 -0.2 980,400 + PGA1_c09550 0.45 -1.6 980,408 - PGA1_c09550 0.46 +1.5 980,408 - PGA1_c09550 0.46 -0.8 980,408 - PGA1_c09550 0.46 +0.9 980,408 - PGA1_c09550 0.46 -0.4 980,487 - PGA1_c09550 0.54 -2.6 980,515 + PGA1_c09550 0.57 -1.2 980,515 + PGA1_c09550 0.57 -0.1 980,520 + PGA1_c09550 0.58 +2.1 980,536 + PGA1_c09550 0.60 -0.5 980,544 + PGA1_c09550 0.60 -0.7 980,556 - PGA1_c09550 0.62 +0.9 980,623 - PGA1_c09550 0.69 +0.1 980,635 - PGA1_c09550 0.70 +0.7 980,675 + PGA1_c09550 0.75 -1.6 980,675 + PGA1_c09550 0.75 +0.4 980,675 + PGA1_c09550 0.75 +0.1 980,683 - PGA1_c09550 0.76 -1.3 980,683 - PGA1_c09550 0.76 -1.7 980,683 - PGA1_c09550 0.76 +0.1 980,683 - PGA1_c09550 0.76 -0.2 980,701 - PGA1_c09550 0.78 -0.9 980,701 - PGA1_c09550 0.78 +1.6 980,719 - PGA1_c09550 0.80 -2.0 980,745 + PGA1_c09550 0.82 +0.0 980,745 + PGA1_c09550 0.82 +0.4 980,745 + PGA1_c09550 0.82 +1.0 980,753 - PGA1_c09550 0.83 +2.1 980,796 + PGA1_c09550 0.88 +0.4 980,802 + PGA1_c09550 0.89 +0.7 980,810 - PGA1_c09550 0.90 -0.3 980,847 + -0.1 980,850 - +0.0 980,855 - +0.2 980,938 - +1.7 981,020 + -0.3
Or see this region's nucleotide sequence