Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08690 and PGA1_c08700 are separated by 74 nucleotides PGA1_c08700 and PGA1_c08710 are separated by 3 nucleotides PGA1_c08710 and PGA1_c08720 overlap by 4 nucleotides
PGA1_c08690: PGA1_c08690 - hypothetical protein, at 896,261 to 896,776
_c08690
PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450
_c08700
PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014
_c08710
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
Position (kb) 897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 896.518 kb on - strand, within PGA1_c08690 at 896.620 kb on + strand, within PGA1_c08690 at 896.622 kb on + strand, within PGA1_c08690 at 896.626 kb on - strand, within PGA1_c08690 at 896.628 kb on - strand, within PGA1_c08690 at 896.715 kb on - strand, within PGA1_c08690 at 896.749 kb on + strand at 896.749 kb on + strand at 896.749 kb on + strand at 896.757 kb on - strand at 896.757 kb on - strand at 896.770 kb on + strand at 896.814 kb on - strand at 896.848 kb on + strand at 896.848 kb on + strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.856 kb on - strand at 896.882 kb on - strand at 896.891 kb on + strand at 896.891 kb on + strand at 896.959 kb on + strand, within PGA1_c08700 at 896.981 kb on - strand, within PGA1_c08700 at 896.986 kb on - strand, within PGA1_c08700 at 897.064 kb on - strand, within PGA1_c08700 at 897.066 kb on + strand, within PGA1_c08700 at 897.094 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.128 kb on - strand, within PGA1_c08700 at 897.152 kb on - strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.270 kb on + strand, within PGA1_c08700 at 897.278 kb on - strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.394 kb on - strand at 897.419 kb on + strand at 897.427 kb on - strand at 897.475 kb on + strand at 897.631 kb on - strand, within PGA1_c08710 at 897.640 kb on - strand, within PGA1_c08710 at 897.641 kb on - strand, within PGA1_c08710 at 897.660 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.733 kb on + strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.868 kb on - strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.901 kb on + strand, within PGA1_c08710 at 897.950 kb on - strand, within PGA1_c08710 at 897.968 kb on - strand at 898.070 kb on + strand at 898.078 kb on - strand at 898.078 kb on - strand at 898.119 kb on - strand at 898.127 kb on - strand at 898.149 kb on + strand at 898.161 kb on + strand at 898.192 kb on + strand, within PGA1_c08720 at 898.220 kb on + strand, within PGA1_c08720 at 898.259 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.388 kb on + strand, within PGA1_c08720 at 898.429 kb on - strand, within PGA1_c08720 at 898.431 kb on + strand, within PGA1_c08720 at 898.438 kb on + strand, within PGA1_c08720 at 898.451 kb on + strand, within PGA1_c08720 at 898.451 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.547 kb on - strand, within PGA1_c08720 at 898.550 kb on - strand, within PGA1_c08720 at 898.579 kb on - strand, within PGA1_c08720 at 898.622 kb on + strand, within PGA1_c08720 at 898.635 kb on - strand, within PGA1_c08720 at 898.655 kb on + strand, within PGA1_c08720 at 898.730 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.778 kb on + strand, within PGA1_c08720 at 898.793 kb on + strand, within PGA1_c08720 at 898.900 kb on - strand, within PGA1_c08720 at 898.952 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.970 kb on + strand, within PGA1_c08720
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 896,518 - PGA1_c08690 0.50 -1.0 896,620 + PGA1_c08690 0.70 +1.3 896,622 + PGA1_c08690 0.70 +1.4 896,626 - PGA1_c08690 0.71 -0.3 896,628 - PGA1_c08690 0.71 +1.0 896,715 - PGA1_c08690 0.88 -1.5 896,749 + +1.4 896,749 + +0.8 896,749 + -0.7 896,757 - -0.7 896,757 - +0.6 896,770 + +0.1 896,814 - -0.4 896,848 + -2.1 896,848 + +0.8 896,856 - +2.8 896,856 - -2.0 896,856 - -0.8 896,856 - +1.6 896,882 - -1.9 896,891 + -2.6 896,891 + -1.4 896,959 + PGA1_c08700 0.18 +0.3 896,981 - PGA1_c08700 0.22 -0.7 896,986 - PGA1_c08700 0.23 +1.6 897,064 - PGA1_c08700 0.35 +1.9 897,066 + PGA1_c08700 0.36 -0.9 897,094 + PGA1_c08700 0.41 +0.4 897,111 + PGA1_c08700 0.43 +0.6 897,111 + PGA1_c08700 0.43 -1.5 897,111 + PGA1_c08700 0.43 -0.8 897,111 + PGA1_c08700 0.43 -0.2 897,111 + PGA1_c08700 0.43 -0.6 897,119 - PGA1_c08700 0.45 +0.6 897,119 - PGA1_c08700 0.45 +1.3 897,119 - PGA1_c08700 0.45 +0.3 897,119 - PGA1_c08700 0.45 -0.0 897,119 - PGA1_c08700 0.45 +0.3 897,119 - PGA1_c08700 0.45 -0.3 897,119 - PGA1_c08700 0.45 +0.3 897,128 - PGA1_c08700 0.46 +1.8 897,152 - PGA1_c08700 0.50 +0.2 897,246 + PGA1_c08700 0.66 +1.4 897,246 + PGA1_c08700 0.66 +0.9 897,270 + PGA1_c08700 0.70 -1.0 897,278 - PGA1_c08700 0.71 -0.2 897,280 + PGA1_c08700 0.71 -1.7 897,280 + PGA1_c08700 0.71 +1.4 897,394 - +0.2 897,419 + +0.0 897,427 - -0.5 897,475 + +0.4 897,631 - PGA1_c08710 0.32 -0.0 897,640 - PGA1_c08710 0.33 +2.6 897,641 - PGA1_c08710 0.33 -0.3 897,660 - PGA1_c08710 0.37 +0.9 897,694 - PGA1_c08710 0.43 -1.0 897,694 - PGA1_c08710 0.43 +0.5 897,733 + PGA1_c08710 0.50 -2.4 897,741 - PGA1_c08710 0.51 -0.3 897,741 - PGA1_c08710 0.51 +2.5 897,818 + PGA1_c08710 0.65 +0.0 897,818 + PGA1_c08710 0.65 +0.3 897,818 + PGA1_c08710 0.65 +0.6 897,868 - PGA1_c08710 0.74 +0.9 897,870 + PGA1_c08710 0.74 -3.1 897,870 + PGA1_c08710 0.74 -1.4 897,878 + PGA1_c08710 0.76 -0.2 897,878 + PGA1_c08710 0.76 +0.5 897,878 - PGA1_c08710 0.76 +2.6 897,886 - PGA1_c08710 0.77 +0.4 897,886 - PGA1_c08710 0.77 +0.5 897,901 + PGA1_c08710 0.80 +0.9 897,950 - PGA1_c08710 0.88 -1.7 897,968 - +1.0 898,070 + +0.0 898,078 - +0.1 898,078 - +0.7 898,119 - +0.7 898,127 - -0.8 898,149 + +1.0 898,161 + +1.6 898,192 + PGA1_c08720 0.11 +1.3 898,220 + PGA1_c08720 0.12 -1.2 898,259 + PGA1_c08720 0.15 +0.0 898,297 + PGA1_c08720 0.17 -0.4 898,297 + PGA1_c08720 0.17 +0.5 898,297 + PGA1_c08720 0.17 +1.3 898,305 - PGA1_c08720 0.17 -1.8 898,305 - PGA1_c08720 0.17 +0.3 898,305 - PGA1_c08720 0.17 -0.1 898,361 - PGA1_c08720 0.21 -1.1 898,361 - PGA1_c08720 0.21 -1.5 898,361 - PGA1_c08720 0.21 +0.4 898,361 - PGA1_c08720 0.21 +0.6 898,388 + PGA1_c08720 0.22 -2.2 898,429 - PGA1_c08720 0.25 +0.4 898,431 + PGA1_c08720 0.25 +0.8 898,438 + PGA1_c08720 0.25 -0.7 898,451 + PGA1_c08720 0.26 +0.6 898,451 - PGA1_c08720 0.26 -0.7 898,456 - PGA1_c08720 0.26 -0.7 898,456 - PGA1_c08720 0.26 -2.6 898,547 - PGA1_c08720 0.32 +0.1 898,550 - PGA1_c08720 0.32 -0.4 898,579 - PGA1_c08720 0.34 -0.4 898,622 + PGA1_c08720 0.36 +0.1 898,635 - PGA1_c08720 0.37 +0.2 898,655 + PGA1_c08720 0.38 -1.0 898,730 + PGA1_c08720 0.43 +1.6 898,735 + PGA1_c08720 0.43 -0.3 898,735 + PGA1_c08720 0.43 -0.6 898,778 + PGA1_c08720 0.46 +0.2 898,793 + PGA1_c08720 0.46 +0.8 898,900 - PGA1_c08720 0.53 +0.7 898,952 + PGA1_c08720 0.56 -0.8 898,960 + PGA1_c08720 0.56 +0.6 898,960 + PGA1_c08720 0.56 -0.5 898,960 - PGA1_c08720 0.56 -0.0 898,968 - PGA1_c08720 0.57 -2.0 898,968 - PGA1_c08720 0.57 +1.2 898,970 + PGA1_c08720 0.57 +0.1
Or see this region's nucleotide sequence