Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33490

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c33480 and PGA1_c33490 overlap by 14 nucleotidesPGA1_c33490 and PGA1_c33500 are separated by 30 nucleotides PGA1_c33480: PGA1_c33480 - protein PmbA, at 3,508,594 to 3,509,940 _c33480 PGA1_c33490: PGA1_c33490 - inositol-1-monophosphatase SuhB, at 3,509,927 to 3,510,730 _c33490 PGA1_c33500: PGA1_c33500 - 3-deoxy-D-manno-octulosonic-acid transferase-like protein, at 3,510,761 to 3,511,957 _c33500 Position (kb) 3509 3510 3511Strain fitness (log2 ratio) -2 -1 0 1 2at 3509.316 kb on + strand, within PGA1_c33480at 3509.910 kb on + strandat 3509.989 kb on + strandat 3510.627 kb on + strand, within PGA1_c33490at 3510.630 kb on - strand, within PGA1_c33490at 3510.708 kb on + strandat 3510.729 kb on + strandat 3510.747 kb on + strandat 3510.763 kb on + strandat 3511.431 kb on - strand, within PGA1_c33500at 3511.518 kb on - strand, within PGA1_c33500at 3511.518 kb on - strand, within PGA1_c33500at 3511.520 kb on + strand, within PGA1_c33500at 3511.535 kb on + strand, within PGA1_c33500at 3511.545 kb on + strand, within PGA1_c33500at 3511.574 kb on + strand, within PGA1_c33500at 3511.584 kb on + strand, within PGA1_c33500at 3511.584 kb on + strand, within PGA1_c33500at 3511.602 kb on - strand, within PGA1_c33500at 3511.665 kb on + strand, within PGA1_c33500at 3511.695 kb on + strand, within PGA1_c33500at 3511.703 kb on + strand, within PGA1_c33500at 3511.703 kb on + strand, within PGA1_c33500at 3511.713 kb on + strand, within PGA1_c33500

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,509,316 + PGA1_c33480 0.54 +0.4
3,509,910 + +2.2
3,509,989 + -0.7
3,510,627 + PGA1_c33490 0.87 -1.5
3,510,630 - PGA1_c33490 0.87 -1.1
3,510,708 + -0.4
3,510,729 + +0.1
3,510,747 + -1.1
3,510,763 + +1.5
3,511,431 - PGA1_c33500 0.56 -0.5
3,511,518 - PGA1_c33500 0.63 +0.6
3,511,518 - PGA1_c33500 0.63 -0.4
3,511,520 + PGA1_c33500 0.63 +0.2
3,511,535 + PGA1_c33500 0.65 -0.0
3,511,545 + PGA1_c33500 0.65 +0.7
3,511,574 + PGA1_c33500 0.68 -1.8
3,511,584 + PGA1_c33500 0.69 -2.3
3,511,584 + PGA1_c33500 0.69 +0.1
3,511,602 - PGA1_c33500 0.70 +0.1
3,511,665 + PGA1_c33500 0.76 +1.5
3,511,695 + PGA1_c33500 0.78 -1.2
3,511,703 + PGA1_c33500 0.79 +0.6
3,511,703 + PGA1_c33500 0.79 -0.4
3,511,713 + PGA1_c33500 0.80 -1.4

Or see this region's nucleotide sequence