Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29660 and PGA1_c29670 are separated by 102 nucleotides PGA1_c29670 and PGA1_c29680 are separated by 133 nucleotides PGA1_c29680 and PGA1_c29690 overlap by 4 nucleotides PGA1_c29690 and PGA1_c29700 are separated by 130 nucleotides
PGA1_c29660: PGA1_c29660 - hypothetical protein, at 3,101,828 to 3,104,017
_c29660
PGA1_c29670: PGA1_c29670 - small heat shock protein IbpA, at 3,104,120 to 3,104,578
_c29670
PGA1_c29680: PGA1_c29680 - serine protease-like protein, at 3,104,712 to 3,105,527
_c29680
PGA1_c29690: PGA1_c29690 - serine protease-like protein, at 3,105,524 to 3,106,378
_c29690
PGA1_c29700: PGA1_c29700 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data) , at 3,106,509 to 3,107,843
_c29700
Position (kb)
3104
3105
3106 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3103.746 kb on - strand, within PGA1_c29660 at 3103.759 kb on + strand, within PGA1_c29660 at 3103.783 kb on + strand, within PGA1_c29660 at 3103.796 kb on - strand, within PGA1_c29660 at 3103.796 kb on - strand, within PGA1_c29660 at 3103.889 kb on + strand at 3103.924 kb on + strand at 3103.943 kb on + strand at 3103.988 kb on + strand at 3104.021 kb on + strand at 3104.021 kb on + strand at 3104.130 kb on + strand at 3104.247 kb on - strand, within PGA1_c29670 at 3104.320 kb on - strand, within PGA1_c29670 at 3104.331 kb on - strand, within PGA1_c29670 at 3104.520 kb on + strand, within PGA1_c29670 at 3104.549 kb on + strand at 3104.557 kb on - strand at 3104.639 kb on - strand at 3104.641 kb on + strand at 3104.641 kb on + strand at 3104.692 kb on - strand at 3104.839 kb on - strand, within PGA1_c29680 at 3104.870 kb on + strand, within PGA1_c29680 at 3104.878 kb on - strand, within PGA1_c29680 at 3104.880 kb on + strand, within PGA1_c29680 at 3104.880 kb on + strand, within PGA1_c29680 at 3104.880 kb on + strand, within PGA1_c29680 at 3104.883 kb on - strand, within PGA1_c29680 at 3104.888 kb on - strand, within PGA1_c29680 at 3104.888 kb on - strand, within PGA1_c29680 at 3104.888 kb on - strand, within PGA1_c29680 at 3104.901 kb on - strand, within PGA1_c29680 at 3104.993 kb on - strand, within PGA1_c29680 at 3105.038 kb on + strand, within PGA1_c29680 at 3105.131 kb on + strand, within PGA1_c29680 at 3105.153 kb on - strand, within PGA1_c29680 at 3105.223 kb on - strand, within PGA1_c29680 at 3105.232 kb on + strand, within PGA1_c29680 at 3105.233 kb on - strand, within PGA1_c29680 at 3105.261 kb on + strand, within PGA1_c29680 at 3105.269 kb on - strand, within PGA1_c29680 at 3105.274 kb on - strand, within PGA1_c29680 at 3105.287 kb on + strand, within PGA1_c29680 at 3105.292 kb on + strand, within PGA1_c29680 at 3105.304 kb on + strand, within PGA1_c29680 at 3105.400 kb on - strand, within PGA1_c29680 at 3105.417 kb on + strand, within PGA1_c29680 at 3105.419 kb on + strand, within PGA1_c29680 at 3105.461 kb on + strand at 3105.478 kb on + strand at 3105.502 kb on + strand at 3105.506 kb on + strand at 3105.506 kb on + strand at 3105.510 kb on - strand at 3105.514 kb on - strand at 3105.538 kb on + strand at 3105.618 kb on + strand, within PGA1_c29690 at 3105.720 kb on + strand, within PGA1_c29690 at 3105.736 kb on + strand, within PGA1_c29690 at 3105.767 kb on + strand, within PGA1_c29690 at 3105.780 kb on + strand, within PGA1_c29690 at 3105.788 kb on - strand, within PGA1_c29690 at 3105.833 kb on - strand, within PGA1_c29690 at 3105.854 kb on - strand, within PGA1_c29690 at 3105.857 kb on + strand, within PGA1_c29690 at 3105.862 kb on + strand, within PGA1_c29690 at 3105.980 kb on + strand, within PGA1_c29690 at 3105.998 kb on - strand, within PGA1_c29690 at 3106.054 kb on - strand, within PGA1_c29690 at 3106.102 kb on - strand, within PGA1_c29690 at 3106.119 kb on - strand, within PGA1_c29690 at 3106.157 kb on - strand, within PGA1_c29690 at 3106.204 kb on + strand, within PGA1_c29690 at 3106.241 kb on - strand, within PGA1_c29690 at 3106.248 kb on + strand, within PGA1_c29690 at 3106.248 kb on + strand, within PGA1_c29690 at 3106.302 kb on + strand at 3106.315 kb on - strand at 3106.322 kb on + strand at 3106.325 kb on - strand at 3106.330 kb on - strand at 3106.389 kb on + strand at 3106.392 kb on - strand at 3106.418 kb on + strand at 3106.470 kb on + strand at 3106.510 kb on + strand at 3106.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 3,103,746 - PGA1_c29660 0.88 -2.1 3,103,759 + PGA1_c29660 0.88 -2.7 3,103,783 + PGA1_c29660 0.89 +2.8 3,103,796 - PGA1_c29660 0.90 +1.4 3,103,796 - PGA1_c29660 0.90 -1.0 3,103,889 + -0.6 3,103,924 + +1.0 3,103,943 + -2.0 3,103,988 + +0.0 3,104,021 + -0.1 3,104,021 + -0.1 3,104,130 + +1.1 3,104,247 - PGA1_c29670 0.28 +1.1 3,104,320 - PGA1_c29670 0.44 -2.8 3,104,331 - PGA1_c29670 0.46 -0.3 3,104,520 + PGA1_c29670 0.87 -1.2 3,104,549 + +1.4 3,104,557 - +0.3 3,104,639 - +0.3 3,104,641 + +1.2 3,104,641 + +0.0 3,104,692 - -0.7 3,104,839 - PGA1_c29680 0.16 +1.3 3,104,870 + PGA1_c29680 0.19 -0.6 3,104,878 - PGA1_c29680 0.20 +1.0 3,104,880 + PGA1_c29680 0.21 -0.0 3,104,880 + PGA1_c29680 0.21 +0.2 3,104,880 + PGA1_c29680 0.21 +0.8 3,104,883 - PGA1_c29680 0.21 +0.2 3,104,888 - PGA1_c29680 0.22 +1.3 3,104,888 - PGA1_c29680 0.22 +1.4 3,104,888 - PGA1_c29680 0.22 +0.9 3,104,901 - PGA1_c29680 0.23 -0.4 3,104,993 - PGA1_c29680 0.34 -0.9 3,105,038 + PGA1_c29680 0.40 +0.7 3,105,131 + PGA1_c29680 0.51 +1.0 3,105,153 - PGA1_c29680 0.54 +0.7 3,105,223 - PGA1_c29680 0.63 -0.6 3,105,232 + PGA1_c29680 0.64 +0.4 3,105,233 - PGA1_c29680 0.64 +1.5 3,105,261 + PGA1_c29680 0.67 -2.3 3,105,269 - PGA1_c29680 0.68 -1.0 3,105,274 - PGA1_c29680 0.69 +0.1 3,105,287 + PGA1_c29680 0.70 +0.7 3,105,292 + PGA1_c29680 0.71 +1.2 3,105,304 + PGA1_c29680 0.73 +0.3 3,105,400 - PGA1_c29680 0.84 +0.7 3,105,417 + PGA1_c29680 0.86 -1.6 3,105,419 + PGA1_c29680 0.87 +1.1 3,105,461 + +0.8 3,105,478 + +2.7 3,105,502 + -0.4 3,105,506 + -0.5 3,105,506 + +0.4 3,105,510 - +0.1 3,105,514 - +1.4 3,105,538 + +0.4 3,105,618 + PGA1_c29690 0.11 +0.7 3,105,720 + PGA1_c29690 0.23 +0.6 3,105,736 + PGA1_c29690 0.25 +1.1 3,105,767 + PGA1_c29690 0.28 +1.7 3,105,780 + PGA1_c29690 0.30 +1.3 3,105,788 - PGA1_c29690 0.31 -0.4 3,105,833 - PGA1_c29690 0.36 +0.8 3,105,854 - PGA1_c29690 0.39 -0.0 3,105,857 + PGA1_c29690 0.39 +0.9 3,105,862 + PGA1_c29690 0.40 +0.7 3,105,980 + PGA1_c29690 0.53 +0.5 3,105,998 - PGA1_c29690 0.55 +1.9 3,106,054 - PGA1_c29690 0.62 +0.7 3,106,102 - PGA1_c29690 0.68 +0.9 3,106,119 - PGA1_c29690 0.70 +0.6 3,106,157 - PGA1_c29690 0.74 -1.8 3,106,204 + PGA1_c29690 0.80 +1.6 3,106,241 - PGA1_c29690 0.84 +0.9 3,106,248 + PGA1_c29690 0.85 -0.4 3,106,248 + PGA1_c29690 0.85 +1.3 3,106,302 + -0.3 3,106,315 - +0.4 3,106,322 + -1.0 3,106,325 - +0.5 3,106,330 - -0.8 3,106,389 + -2.1 3,106,392 - +0.7 3,106,418 + +0.4 3,106,470 + -0.1 3,106,510 + +0.1 3,106,510 + +0.9
Or see this region's nucleotide sequence