Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29680

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29660 and PGA1_c29670 are separated by 102 nucleotidesPGA1_c29670 and PGA1_c29680 are separated by 133 nucleotidesPGA1_c29680 and PGA1_c29690 overlap by 4 nucleotidesPGA1_c29690 and PGA1_c29700 are separated by 130 nucleotides PGA1_c29660: PGA1_c29660 - hypothetical protein, at 3,101,828 to 3,104,017 _c29660 PGA1_c29670: PGA1_c29670 - small heat shock protein IbpA, at 3,104,120 to 3,104,578 _c29670 PGA1_c29680: PGA1_c29680 - serine protease-like protein, at 3,104,712 to 3,105,527 _c29680 PGA1_c29690: PGA1_c29690 - serine protease-like protein, at 3,105,524 to 3,106,378 _c29690 PGA1_c29700: PGA1_c29700 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 3,106,509 to 3,107,843 _c29700 Position (kb) 3104 3105 3106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3103.746 kb on - strand, within PGA1_c29660at 3103.759 kb on + strand, within PGA1_c29660at 3103.783 kb on + strand, within PGA1_c29660at 3103.796 kb on - strand, within PGA1_c29660at 3103.796 kb on - strand, within PGA1_c29660at 3103.889 kb on + strandat 3103.924 kb on + strandat 3103.943 kb on + strandat 3103.988 kb on + strandat 3104.021 kb on + strandat 3104.021 kb on + strandat 3104.130 kb on + strandat 3104.247 kb on - strand, within PGA1_c29670at 3104.320 kb on - strand, within PGA1_c29670at 3104.331 kb on - strand, within PGA1_c29670at 3104.520 kb on + strand, within PGA1_c29670at 3104.549 kb on + strandat 3104.557 kb on - strandat 3104.639 kb on - strandat 3104.641 kb on + strandat 3104.641 kb on + strandat 3104.692 kb on - strandat 3104.839 kb on - strand, within PGA1_c29680at 3104.870 kb on + strand, within PGA1_c29680at 3104.878 kb on - strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.883 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.901 kb on - strand, within PGA1_c29680at 3104.993 kb on - strand, within PGA1_c29680at 3105.038 kb on + strand, within PGA1_c29680at 3105.131 kb on + strand, within PGA1_c29680at 3105.153 kb on - strand, within PGA1_c29680at 3105.223 kb on - strand, within PGA1_c29680at 3105.232 kb on + strand, within PGA1_c29680at 3105.233 kb on - strand, within PGA1_c29680at 3105.261 kb on + strand, within PGA1_c29680at 3105.269 kb on - strand, within PGA1_c29680at 3105.274 kb on - strand, within PGA1_c29680at 3105.287 kb on + strand, within PGA1_c29680at 3105.292 kb on + strand, within PGA1_c29680at 3105.304 kb on + strand, within PGA1_c29680at 3105.400 kb on - strand, within PGA1_c29680at 3105.417 kb on + strand, within PGA1_c29680at 3105.419 kb on + strand, within PGA1_c29680at 3105.461 kb on + strandat 3105.478 kb on + strandat 3105.502 kb on + strandat 3105.506 kb on + strandat 3105.506 kb on + strandat 3105.510 kb on - strandat 3105.514 kb on - strandat 3105.538 kb on + strandat 3105.618 kb on + strand, within PGA1_c29690at 3105.720 kb on + strand, within PGA1_c29690at 3105.736 kb on + strand, within PGA1_c29690at 3105.767 kb on + strand, within PGA1_c29690at 3105.780 kb on + strand, within PGA1_c29690at 3105.788 kb on - strand, within PGA1_c29690at 3105.833 kb on - strand, within PGA1_c29690at 3105.854 kb on - strand, within PGA1_c29690at 3105.857 kb on + strand, within PGA1_c29690at 3105.862 kb on + strand, within PGA1_c29690at 3105.980 kb on + strand, within PGA1_c29690at 3105.998 kb on - strand, within PGA1_c29690at 3106.054 kb on - strand, within PGA1_c29690at 3106.102 kb on - strand, within PGA1_c29690at 3106.119 kb on - strand, within PGA1_c29690at 3106.157 kb on - strand, within PGA1_c29690at 3106.204 kb on + strand, within PGA1_c29690at 3106.241 kb on - strand, within PGA1_c29690at 3106.248 kb on + strand, within PGA1_c29690at 3106.248 kb on + strand, within PGA1_c29690at 3106.302 kb on + strandat 3106.315 kb on - strandat 3106.322 kb on + strandat 3106.325 kb on - strandat 3106.330 kb on - strandat 3106.389 kb on + strandat 3106.392 kb on - strandat 3106.418 kb on + strandat 3106.470 kb on + strandat 3106.510 kb on + strandat 3106.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,103,746 - PGA1_c29660 0.88 -2.1
3,103,759 + PGA1_c29660 0.88 -2.7
3,103,783 + PGA1_c29660 0.89 +2.8
3,103,796 - PGA1_c29660 0.90 +1.4
3,103,796 - PGA1_c29660 0.90 -1.0
3,103,889 + -0.6
3,103,924 + +1.0
3,103,943 + -2.0
3,103,988 + +0.0
3,104,021 + -0.1
3,104,021 + -0.1
3,104,130 + +1.1
3,104,247 - PGA1_c29670 0.28 +1.1
3,104,320 - PGA1_c29670 0.44 -2.8
3,104,331 - PGA1_c29670 0.46 -0.3
3,104,520 + PGA1_c29670 0.87 -1.2
3,104,549 + +1.4
3,104,557 - +0.3
3,104,639 - +0.3
3,104,641 + +1.2
3,104,641 + +0.0
3,104,692 - -0.7
3,104,839 - PGA1_c29680 0.16 +1.3
3,104,870 + PGA1_c29680 0.19 -0.6
3,104,878 - PGA1_c29680 0.20 +1.0
3,104,880 + PGA1_c29680 0.21 -0.0
3,104,880 + PGA1_c29680 0.21 +0.2
3,104,880 + PGA1_c29680 0.21 +0.8
3,104,883 - PGA1_c29680 0.21 +0.2
3,104,888 - PGA1_c29680 0.22 +1.3
3,104,888 - PGA1_c29680 0.22 +1.4
3,104,888 - PGA1_c29680 0.22 +0.9
3,104,901 - PGA1_c29680 0.23 -0.4
3,104,993 - PGA1_c29680 0.34 -0.9
3,105,038 + PGA1_c29680 0.40 +0.7
3,105,131 + PGA1_c29680 0.51 +1.0
3,105,153 - PGA1_c29680 0.54 +0.7
3,105,223 - PGA1_c29680 0.63 -0.6
3,105,232 + PGA1_c29680 0.64 +0.4
3,105,233 - PGA1_c29680 0.64 +1.5
3,105,261 + PGA1_c29680 0.67 -2.3
3,105,269 - PGA1_c29680 0.68 -1.0
3,105,274 - PGA1_c29680 0.69 +0.1
3,105,287 + PGA1_c29680 0.70 +0.7
3,105,292 + PGA1_c29680 0.71 +1.2
3,105,304 + PGA1_c29680 0.73 +0.3
3,105,400 - PGA1_c29680 0.84 +0.7
3,105,417 + PGA1_c29680 0.86 -1.6
3,105,419 + PGA1_c29680 0.87 +1.1
3,105,461 + +0.8
3,105,478 + +2.7
3,105,502 + -0.4
3,105,506 + -0.5
3,105,506 + +0.4
3,105,510 - +0.1
3,105,514 - +1.4
3,105,538 + +0.4
3,105,618 + PGA1_c29690 0.11 +0.7
3,105,720 + PGA1_c29690 0.23 +0.6
3,105,736 + PGA1_c29690 0.25 +1.1
3,105,767 + PGA1_c29690 0.28 +1.7
3,105,780 + PGA1_c29690 0.30 +1.3
3,105,788 - PGA1_c29690 0.31 -0.4
3,105,833 - PGA1_c29690 0.36 +0.8
3,105,854 - PGA1_c29690 0.39 -0.0
3,105,857 + PGA1_c29690 0.39 +0.9
3,105,862 + PGA1_c29690 0.40 +0.7
3,105,980 + PGA1_c29690 0.53 +0.5
3,105,998 - PGA1_c29690 0.55 +1.9
3,106,054 - PGA1_c29690 0.62 +0.7
3,106,102 - PGA1_c29690 0.68 +0.9
3,106,119 - PGA1_c29690 0.70 +0.6
3,106,157 - PGA1_c29690 0.74 -1.8
3,106,204 + PGA1_c29690 0.80 +1.6
3,106,241 - PGA1_c29690 0.84 +0.9
3,106,248 + PGA1_c29690 0.85 -0.4
3,106,248 + PGA1_c29690 0.85 +1.3
3,106,302 + -0.3
3,106,315 - +0.4
3,106,322 + -1.0
3,106,325 - +0.5
3,106,330 - -0.8
3,106,389 + -2.1
3,106,392 - +0.7
3,106,418 + +0.4
3,106,470 + -0.1
3,106,510 + +0.1
3,106,510 + +0.9

Or see this region's nucleotide sequence