Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24210

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24190 and PGA1_c24200 are separated by 181 nucleotidesPGA1_c24200 and PGA1_c24210 are separated by 90 nucleotidesPGA1_c24210 and PGA1_c24220 are separated by 104 nucleotides PGA1_c24190: PGA1_c24190 - ATP-dependent RNA helicase HrpB, at 2,522,356 to 2,524,860 _c24190 PGA1_c24200: PGA1_c24200 - putative NUDIX hydrolase, at 2,525,042 to 2,525,500 _c24200 PGA1_c24210: PGA1_c24210 - putative phosphate transporter, at 2,525,591 to 2,527,072 _c24210 PGA1_c24220: PGA1_c24220 - ornithine carbamoyltransferase ArgF, at 2,527,177 to 2,528,103 _c24220 Position (kb) 2525 2526 2527 2528Strain fitness (log2 ratio) -2 -1 0 1 2at 2524.637 kb on + strandat 2524.700 kb on - strandat 2524.724 kb on + strandat 2524.732 kb on - strandat 2524.762 kb on + strandat 2524.770 kb on - strandat 2524.800 kb on + strandat 2524.800 kb on + strandat 2524.805 kb on + strandat 2524.805 kb on + strandat 2524.808 kb on - strandat 2524.868 kb on - strandat 2524.935 kb on + strandat 2524.943 kb on - strandat 2524.944 kb on + strandat 2525.024 kb on + strandat 2525.087 kb on + strandat 2525.146 kb on + strand, within PGA1_c24200at 2525.211 kb on - strand, within PGA1_c24200at 2525.226 kb on - strand, within PGA1_c24200at 2525.253 kb on + strand, within PGA1_c24200at 2525.299 kb on + strand, within PGA1_c24200at 2525.370 kb on - strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.408 kb on - strand, within PGA1_c24200at 2525.408 kb on - strand, within PGA1_c24200at 2525.410 kb on + strand, within PGA1_c24200at 2525.431 kb on - strand, within PGA1_c24200at 2525.453 kb on + strand, within PGA1_c24200at 2525.713 kb on + strandat 2525.716 kb on - strandat 2525.845 kb on + strand, within PGA1_c24210at 2525.853 kb on - strand, within PGA1_c24210at 2525.878 kb on + strand, within PGA1_c24210at 2525.878 kb on + strand, within PGA1_c24210at 2525.886 kb on - strand, within PGA1_c24210at 2526.101 kb on + strand, within PGA1_c24210at 2526.341 kb on - strand, within PGA1_c24210at 2526.361 kb on - strand, within PGA1_c24210at 2526.402 kb on + strand, within PGA1_c24210at 2526.402 kb on - strand, within PGA1_c24210at 2526.405 kb on - strand, within PGA1_c24210at 2526.429 kb on - strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.465 kb on - strand, within PGA1_c24210at 2526.502 kb on - strand, within PGA1_c24210at 2526.507 kb on - strand, within PGA1_c24210at 2526.527 kb on - strand, within PGA1_c24210at 2526.560 kb on - strand, within PGA1_c24210at 2526.562 kb on + strand, within PGA1_c24210at 2526.629 kb on - strand, within PGA1_c24210at 2526.645 kb on + strand, within PGA1_c24210at 2526.685 kb on + strand, within PGA1_c24210at 2526.742 kb on + strand, within PGA1_c24210at 2526.744 kb on - strand, within PGA1_c24210at 2526.801 kb on + strand, within PGA1_c24210at 2526.809 kb on - strand, within PGA1_c24210at 2526.809 kb on - strand, within PGA1_c24210at 2526.865 kb on - strand, within PGA1_c24210at 2526.865 kb on - strand, within PGA1_c24210at 2526.911 kb on - strand, within PGA1_c24210at 2526.921 kb on - strand, within PGA1_c24210at 2527.025 kb on - strandat 2527.042 kb on - strandat 2527.091 kb on + strandat 2527.165 kb on + strandat 2527.170 kb on + strandat 2527.400 kb on - strand, within PGA1_c24220at 2527.561 kb on - strand, within PGA1_c24220at 2527.662 kb on + strand, within PGA1_c24220at 2527.670 kb on - strand, within PGA1_c24220at 2527.845 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.025 kb on + strandat 2528.043 kb on + strandat 2528.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,524,637 + +1.0
2,524,700 - -0.2
2,524,724 + +0.3
2,524,732 - +0.8
2,524,762 + -0.0
2,524,770 - +0.0
2,524,800 + -1.3
2,524,800 + -0.1
2,524,805 + -0.7
2,524,805 + +0.6
2,524,808 - +0.9
2,524,868 - -0.4
2,524,935 + -0.3
2,524,943 - -1.9
2,524,944 + +1.2
2,525,024 + -0.4
2,525,087 + +0.6
2,525,146 + PGA1_c24200 0.23 +0.3
2,525,211 - PGA1_c24200 0.37 -1.0
2,525,226 - PGA1_c24200 0.40 +1.8
2,525,253 + PGA1_c24200 0.46 -1.9
2,525,299 + PGA1_c24200 0.56 +1.2
2,525,370 - PGA1_c24200 0.71 -0.9
2,525,400 + PGA1_c24200 0.78 -0.2
2,525,400 + PGA1_c24200 0.78 -0.6
2,525,400 + PGA1_c24200 0.78 -1.9
2,525,400 + PGA1_c24200 0.78 +0.0
2,525,400 + PGA1_c24200 0.78 -0.9
2,525,400 + PGA1_c24200 0.78 -2.0
2,525,400 + PGA1_c24200 0.78 -1.1
2,525,408 - PGA1_c24200 0.80 -0.2
2,525,408 - PGA1_c24200 0.80 -1.0
2,525,410 + PGA1_c24200 0.80 -2.6
2,525,431 - PGA1_c24200 0.85 -2.2
2,525,453 + PGA1_c24200 0.90 -1.5
2,525,713 + +0.8
2,525,716 - -0.6
2,525,845 + PGA1_c24210 0.17 -0.4
2,525,853 - PGA1_c24210 0.18 -1.6
2,525,878 + PGA1_c24210 0.19 +1.9
2,525,878 + PGA1_c24210 0.19 +1.4
2,525,886 - PGA1_c24210 0.20 +1.0
2,526,101 + PGA1_c24210 0.34 -0.2
2,526,341 - PGA1_c24210 0.51 +1.6
2,526,361 - PGA1_c24210 0.52 +0.0
2,526,402 + PGA1_c24210 0.55 +1.7
2,526,402 - PGA1_c24210 0.55 +1.2
2,526,405 - PGA1_c24210 0.55 +0.9
2,526,429 - PGA1_c24210 0.57 -0.7
2,526,445 + PGA1_c24210 0.58 +1.1
2,526,445 + PGA1_c24210 0.58 +1.3
2,526,465 - PGA1_c24210 0.59 +0.2
2,526,502 - PGA1_c24210 0.61 +0.3
2,526,507 - PGA1_c24210 0.62 +0.1
2,526,527 - PGA1_c24210 0.63 +0.9
2,526,560 - PGA1_c24210 0.65 +0.7
2,526,562 + PGA1_c24210 0.66 -0.2
2,526,629 - PGA1_c24210 0.70 +0.8
2,526,645 + PGA1_c24210 0.71 -0.9
2,526,685 + PGA1_c24210 0.74 +0.7
2,526,742 + PGA1_c24210 0.78 +2.0
2,526,744 - PGA1_c24210 0.78 +1.0
2,526,801 + PGA1_c24210 0.82 -0.1
2,526,809 - PGA1_c24210 0.82 +0.4
2,526,809 - PGA1_c24210 0.82 -0.3
2,526,865 - PGA1_c24210 0.86 -1.8
2,526,865 - PGA1_c24210 0.86 +0.6
2,526,911 - PGA1_c24210 0.89 +1.3
2,526,921 - PGA1_c24210 0.90 +1.0
2,527,025 - +0.2
2,527,042 - +0.4
2,527,091 + +0.0
2,527,165 + -0.4
2,527,170 + +0.5
2,527,400 - PGA1_c24220 0.24 -2.0
2,527,561 - PGA1_c24220 0.41 -1.1
2,527,662 + PGA1_c24220 0.52 -1.2
2,527,670 - PGA1_c24220 0.53 -2.7
2,527,845 - PGA1_c24220 0.72 -0.4
2,528,008 - PGA1_c24220 0.90 -1.2
2,528,008 - PGA1_c24220 0.90 -1.4
2,528,025 + -2.6
2,528,043 + -0.2
2,528,069 - -1.2

Or see this region's nucleotide sequence