Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20650 and PGA1_c20660 are separated by 200 nucleotides PGA1_c20660 and PGA1_c20670 overlap by 1 nucleotides PGA1_c20670 and PGA1_c20680 are separated by 108 nucleotides
PGA1_c20650: PGA1_c20650 - triosephosphate isomerase TpiA, at 2,140,103 to 2,140,855
_c20650
PGA1_c20660: PGA1_c20660 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) , at 2,141,056 to 2,142,459
_c20660
PGA1_c20670: PGA1_c20670 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, small permease component (from data) , at 2,142,459 to 2,143,136
_c20670
PGA1_c20680: PGA1_c20680 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) , at 2,143,245 to 2,144,246
_c20680
Position (kb)
2141
2142
2143 Strain fitness (log2 ratio)
-1
0
1
2 at 2140.061 kb on + strand at 2140.069 kb on - strand at 2140.092 kb on - strand at 2140.863 kb on + strand at 2140.915 kb on - strand at 2141.102 kb on + strand at 2141.102 kb on + strand at 2141.115 kb on + strand at 2141.115 kb on + strand at 2141.154 kb on - strand at 2141.213 kb on - strand, within PGA1_c20660 at 2141.224 kb on + strand, within PGA1_c20660 at 2141.231 kb on - strand, within PGA1_c20660 at 2141.286 kb on + strand, within PGA1_c20660 at 2141.429 kb on - strand, within PGA1_c20660 at 2141.586 kb on + strand, within PGA1_c20660 at 2141.721 kb on - strand, within PGA1_c20660 at 2141.863 kb on - strand, within PGA1_c20660 at 2141.886 kb on + strand, within PGA1_c20660 at 2142.045 kb on - strand, within PGA1_c20660 at 2142.045 kb on - strand, within PGA1_c20660 at 2142.150 kb on + strand, within PGA1_c20660 at 2142.382 kb on - strand at 2142.418 kb on + strand at 2142.450 kb on - strand at 2142.462 kb on + strand at 2142.608 kb on + strand, within PGA1_c20670 at 2142.613 kb on - strand, within PGA1_c20670 at 2142.630 kb on - strand, within PGA1_c20670 at 2142.665 kb on - strand, within PGA1_c20670 at 2142.694 kb on + strand, within PGA1_c20670 at 2142.699 kb on + strand, within PGA1_c20670 at 2142.707 kb on - strand, within PGA1_c20670 at 2142.745 kb on - strand, within PGA1_c20670 at 2142.793 kb on + strand, within PGA1_c20670 at 2142.808 kb on - strand, within PGA1_c20670 at 2142.839 kb on + strand, within PGA1_c20670 at 2142.847 kb on - strand, within PGA1_c20670 at 2142.902 kb on - strand, within PGA1_c20670 at 2142.912 kb on + strand, within PGA1_c20670 at 2142.937 kb on - strand, within PGA1_c20670 at 2143.104 kb on - strand at 2143.120 kb on + strand at 2143.121 kb on + strand at 2143.153 kb on - strand at 2143.352 kb on + strand, within PGA1_c20680 at 2143.360 kb on - strand, within PGA1_c20680 at 2143.360 kb on - strand, within PGA1_c20680 at 2143.411 kb on + strand, within PGA1_c20680 at 2143.411 kb on + strand, within PGA1_c20680 at 2143.419 kb on - strand, within PGA1_c20680 at 2143.419 kb on - strand, within PGA1_c20680 at 2143.419 kb on - strand, within PGA1_c20680
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,140,061 + +1.8 2,140,069 - +0.4 2,140,092 - +1.9 2,140,863 + +1.7 2,140,915 - +0.8 2,141,102 + -1.5 2,141,102 + +0.7 2,141,115 + -0.2 2,141,115 + +0.4 2,141,154 - -0.1 2,141,213 - PGA1_c20660 0.11 +1.9 2,141,224 + PGA1_c20660 0.12 +1.6 2,141,231 - PGA1_c20660 0.12 +0.1 2,141,286 + PGA1_c20660 0.16 +0.8 2,141,429 - PGA1_c20660 0.27 +1.3 2,141,586 + PGA1_c20660 0.38 -1.4 2,141,721 - PGA1_c20660 0.47 +0.6 2,141,863 - PGA1_c20660 0.57 +1.3 2,141,886 + PGA1_c20660 0.59 +0.6 2,142,045 - PGA1_c20660 0.70 +1.4 2,142,045 - PGA1_c20660 0.70 +0.3 2,142,150 + PGA1_c20660 0.78 +0.7 2,142,382 - +0.1 2,142,418 + -1.4 2,142,450 - -1.2 2,142,462 + +0.7 2,142,608 + PGA1_c20670 0.22 -1.7 2,142,613 - PGA1_c20670 0.23 -0.0 2,142,630 - PGA1_c20670 0.25 +0.8 2,142,665 - PGA1_c20670 0.30 +0.3 2,142,694 + PGA1_c20670 0.35 -1.0 2,142,699 + PGA1_c20670 0.35 -1.6 2,142,707 - PGA1_c20670 0.37 +0.8 2,142,745 - PGA1_c20670 0.42 -1.3 2,142,793 + PGA1_c20670 0.49 +0.2 2,142,808 - PGA1_c20670 0.51 +1.8 2,142,839 + PGA1_c20670 0.56 -1.2 2,142,847 - PGA1_c20670 0.57 +0.1 2,142,902 - PGA1_c20670 0.65 +0.9 2,142,912 + PGA1_c20670 0.67 -1.7 2,142,937 - PGA1_c20670 0.71 -0.0 2,143,104 - -1.1 2,143,120 + +1.2 2,143,121 + +0.3 2,143,153 - -0.2 2,143,352 + PGA1_c20680 0.11 +1.2 2,143,360 - PGA1_c20680 0.11 +0.5 2,143,360 - PGA1_c20680 0.11 +1.4 2,143,411 + PGA1_c20680 0.17 +0.9 2,143,411 + PGA1_c20680 0.17 -0.6 2,143,419 - PGA1_c20680 0.17 -1.1 2,143,419 - PGA1_c20680 0.17 +0.1 2,143,419 - PGA1_c20680 0.17 -0.1
Or see this region's nucleotide sequence