Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20660

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20650 and PGA1_c20660 are separated by 200 nucleotidesPGA1_c20660 and PGA1_c20670 overlap by 1 nucleotidesPGA1_c20670 and PGA1_c20680 are separated by 108 nucleotides PGA1_c20650: PGA1_c20650 - triosephosphate isomerase TpiA, at 2,140,103 to 2,140,855 _c20650 PGA1_c20660: PGA1_c20660 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data), at 2,141,056 to 2,142,459 _c20660 PGA1_c20670: PGA1_c20670 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, small permease component (from data), at 2,142,459 to 2,143,136 _c20670 PGA1_c20680: PGA1_c20680 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data), at 2,143,245 to 2,144,246 _c20680 Position (kb) 2141 2142 2143Strain fitness (log2 ratio) -1 0 1 2at 2140.061 kb on + strandat 2140.069 kb on - strandat 2140.092 kb on - strandat 2140.863 kb on + strandat 2140.915 kb on - strandat 2141.102 kb on + strandat 2141.102 kb on + strandat 2141.115 kb on + strandat 2141.115 kb on + strandat 2141.154 kb on - strandat 2141.213 kb on - strand, within PGA1_c20660at 2141.224 kb on + strand, within PGA1_c20660at 2141.231 kb on - strand, within PGA1_c20660at 2141.286 kb on + strand, within PGA1_c20660at 2141.429 kb on - strand, within PGA1_c20660at 2141.586 kb on + strand, within PGA1_c20660at 2141.721 kb on - strand, within PGA1_c20660at 2141.863 kb on - strand, within PGA1_c20660at 2141.886 kb on + strand, within PGA1_c20660at 2142.045 kb on - strand, within PGA1_c20660at 2142.045 kb on - strand, within PGA1_c20660at 2142.150 kb on + strand, within PGA1_c20660at 2142.382 kb on - strandat 2142.418 kb on + strandat 2142.450 kb on - strandat 2142.462 kb on + strandat 2142.608 kb on + strand, within PGA1_c20670at 2142.613 kb on - strand, within PGA1_c20670at 2142.630 kb on - strand, within PGA1_c20670at 2142.665 kb on - strand, within PGA1_c20670at 2142.694 kb on + strand, within PGA1_c20670at 2142.699 kb on + strand, within PGA1_c20670at 2142.707 kb on - strand, within PGA1_c20670at 2142.745 kb on - strand, within PGA1_c20670at 2142.793 kb on + strand, within PGA1_c20670at 2142.808 kb on - strand, within PGA1_c20670at 2142.839 kb on + strand, within PGA1_c20670at 2142.847 kb on - strand, within PGA1_c20670at 2142.902 kb on - strand, within PGA1_c20670at 2142.912 kb on + strand, within PGA1_c20670at 2142.937 kb on - strand, within PGA1_c20670at 2143.104 kb on - strandat 2143.120 kb on + strandat 2143.121 kb on + strandat 2143.153 kb on - strandat 2143.352 kb on + strand, within PGA1_c20680at 2143.360 kb on - strand, within PGA1_c20680at 2143.360 kb on - strand, within PGA1_c20680at 2143.411 kb on + strand, within PGA1_c20680at 2143.411 kb on + strand, within PGA1_c20680at 2143.419 kb on - strand, within PGA1_c20680at 2143.419 kb on - strand, within PGA1_c20680at 2143.419 kb on - strand, within PGA1_c20680

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,140,061 + +1.8
2,140,069 - +0.4
2,140,092 - +1.9
2,140,863 + +1.7
2,140,915 - +0.8
2,141,102 + -1.5
2,141,102 + +0.7
2,141,115 + -0.2
2,141,115 + +0.4
2,141,154 - -0.1
2,141,213 - PGA1_c20660 0.11 +1.9
2,141,224 + PGA1_c20660 0.12 +1.6
2,141,231 - PGA1_c20660 0.12 +0.1
2,141,286 + PGA1_c20660 0.16 +0.8
2,141,429 - PGA1_c20660 0.27 +1.3
2,141,586 + PGA1_c20660 0.38 -1.4
2,141,721 - PGA1_c20660 0.47 +0.6
2,141,863 - PGA1_c20660 0.57 +1.3
2,141,886 + PGA1_c20660 0.59 +0.6
2,142,045 - PGA1_c20660 0.70 +1.4
2,142,045 - PGA1_c20660 0.70 +0.3
2,142,150 + PGA1_c20660 0.78 +0.7
2,142,382 - +0.1
2,142,418 + -1.4
2,142,450 - -1.2
2,142,462 + +0.7
2,142,608 + PGA1_c20670 0.22 -1.7
2,142,613 - PGA1_c20670 0.23 -0.0
2,142,630 - PGA1_c20670 0.25 +0.8
2,142,665 - PGA1_c20670 0.30 +0.3
2,142,694 + PGA1_c20670 0.35 -1.0
2,142,699 + PGA1_c20670 0.35 -1.6
2,142,707 - PGA1_c20670 0.37 +0.8
2,142,745 - PGA1_c20670 0.42 -1.3
2,142,793 + PGA1_c20670 0.49 +0.2
2,142,808 - PGA1_c20670 0.51 +1.8
2,142,839 + PGA1_c20670 0.56 -1.2
2,142,847 - PGA1_c20670 0.57 +0.1
2,142,902 - PGA1_c20670 0.65 +0.9
2,142,912 + PGA1_c20670 0.67 -1.7
2,142,937 - PGA1_c20670 0.71 -0.0
2,143,104 - -1.1
2,143,120 + +1.2
2,143,121 + +0.3
2,143,153 - -0.2
2,143,352 + PGA1_c20680 0.11 +1.2
2,143,360 - PGA1_c20680 0.11 +0.5
2,143,360 - PGA1_c20680 0.11 +1.4
2,143,411 + PGA1_c20680 0.17 +0.9
2,143,411 + PGA1_c20680 0.17 -0.6
2,143,419 - PGA1_c20680 0.17 -1.1
2,143,419 - PGA1_c20680 0.17 +0.1
2,143,419 - PGA1_c20680 0.17 -0.1

Or see this region's nucleotide sequence