Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10860 and PGA1_c10870 overlap by 4 nucleotides PGA1_c10870 and PGA1_c10880 overlap by 4 nucleotides PGA1_c10880 and PGA1_c10890 are separated by 259 nucleotides
PGA1_c10860: PGA1_c10860 - putative ABC transporter, ATP binding protein, at 1,122,495 to 1,123,241
_c10860
PGA1_c10870: PGA1_c10870 - conserved hypothetical integral membrane protein, at 1,123,238 to 1,124,038
_c10870
PGA1_c10880: PGA1_c10880 - alanine racemase, biosynthetic, at 1,124,035 to 1,125,072
_c10880
PGA1_c10890: PGA1_c10890 - replicative DNA helicase DnaB, at 1,125,332 to 1,126,852
_c10890
Position (kb)
1124
1125
1126 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1123.084 kb on + strand, within PGA1_c10860 at 1123.092 kb on - strand, within PGA1_c10860 at 1123.120 kb on + strand, within PGA1_c10860 at 1123.151 kb on + strand, within PGA1_c10860 at 1123.159 kb on - strand, within PGA1_c10860 at 1123.203 kb on - strand at 1123.233 kb on - strand at 1123.291 kb on - strand at 1123.318 kb on - strand, within PGA1_c10870 at 1123.325 kb on + strand, within PGA1_c10870 at 1123.333 kb on - strand, within PGA1_c10870 at 1123.333 kb on - strand, within PGA1_c10870 at 1123.333 kb on - strand, within PGA1_c10870 at 1123.336 kb on + strand, within PGA1_c10870 at 1123.370 kb on + strand, within PGA1_c10870 at 1123.415 kb on + strand, within PGA1_c10870 at 1123.423 kb on - strand, within PGA1_c10870 at 1123.435 kb on + strand, within PGA1_c10870 at 1123.443 kb on - strand, within PGA1_c10870 at 1123.588 kb on + strand, within PGA1_c10870 at 1123.622 kb on - strand, within PGA1_c10870 at 1123.631 kb on + strand, within PGA1_c10870 at 1123.692 kb on + strand, within PGA1_c10870 at 1123.778 kb on - strand, within PGA1_c10870 at 1123.805 kb on + strand, within PGA1_c10870 at 1123.825 kb on + strand, within PGA1_c10870 at 1123.906 kb on - strand, within PGA1_c10870 at 1123.936 kb on + strand, within PGA1_c10870 at 1123.943 kb on - strand, within PGA1_c10870 at 1124.042 kb on + strand at 1124.065 kb on + strand at 1124.130 kb on + strand at 1124.199 kb on - strand, within PGA1_c10880 at 1124.217 kb on + strand, within PGA1_c10880 at 1124.218 kb on - strand, within PGA1_c10880 at 1124.225 kb on - strand, within PGA1_c10880 at 1124.225 kb on - strand, within PGA1_c10880 at 1124.328 kb on + strand, within PGA1_c10880 at 1124.336 kb on - strand, within PGA1_c10880 at 1124.367 kb on + strand, within PGA1_c10880 at 1124.367 kb on + strand, within PGA1_c10880 at 1124.485 kb on - strand, within PGA1_c10880 at 1124.530 kb on + strand, within PGA1_c10880 at 1124.537 kb on + strand, within PGA1_c10880 at 1124.537 kb on + strand, within PGA1_c10880 at 1124.545 kb on - strand, within PGA1_c10880 at 1124.545 kb on - strand, within PGA1_c10880 at 1124.547 kb on + strand, within PGA1_c10880 at 1124.555 kb on - strand, within PGA1_c10880 at 1124.581 kb on - strand, within PGA1_c10880 at 1124.723 kb on - strand, within PGA1_c10880 at 1124.815 kb on + strand, within PGA1_c10880 at 1124.874 kb on + strand, within PGA1_c10880 at 1124.921 kb on + strand, within PGA1_c10880 at 1124.929 kb on - strand, within PGA1_c10880 at 1124.939 kb on - strand, within PGA1_c10880 at 1124.972 kb on + strand at 1124.972 kb on + strand at 1125.018 kb on + strand at 1125.025 kb on + strand at 1125.078 kb on + strand at 1125.078 kb on + strand at 1125.078 kb on + strand at 1125.078 kb on + strand at 1125.078 kb on + strand at 1125.086 kb on - strand at 1125.086 kb on - strand at 1125.086 kb on - strand at 1125.086 kb on - strand at 1125.101 kb on + strand at 1125.101 kb on + strand at 1125.109 kb on - strand at 1125.109 kb on - strand at 1125.249 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on + strand at 1125.257 kb on - strand at 1125.257 kb on - strand at 1125.257 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.265 kb on - strand at 1125.277 kb on - strand at 1125.277 kb on - strand at 1125.330 kb on + strand at 1125.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,123,084 + PGA1_c10860 0.79 -0.2 1,123,092 - PGA1_c10860 0.80 +0.9 1,123,120 + PGA1_c10860 0.84 +1.3 1,123,151 + PGA1_c10860 0.88 -1.2 1,123,159 - PGA1_c10860 0.89 -1.0 1,123,203 - +0.4 1,123,233 - -0.1 1,123,291 - +0.8 1,123,318 - PGA1_c10870 0.10 -0.2 1,123,325 + PGA1_c10870 0.11 -0.0 1,123,333 - PGA1_c10870 0.12 -2.3 1,123,333 - PGA1_c10870 0.12 -0.7 1,123,333 - PGA1_c10870 0.12 -0.7 1,123,336 + PGA1_c10870 0.12 -0.2 1,123,370 + PGA1_c10870 0.16 +1.4 1,123,415 + PGA1_c10870 0.22 +0.7 1,123,423 - PGA1_c10870 0.23 +0.7 1,123,435 + PGA1_c10870 0.25 -2.0 1,123,443 - PGA1_c10870 0.26 +0.2 1,123,588 + PGA1_c10870 0.44 -0.6 1,123,622 - PGA1_c10870 0.48 +0.3 1,123,631 + PGA1_c10870 0.49 +0.7 1,123,692 + PGA1_c10870 0.57 -0.1 1,123,778 - PGA1_c10870 0.67 -1.0 1,123,805 + PGA1_c10870 0.71 +0.6 1,123,825 + PGA1_c10870 0.73 -0.6 1,123,906 - PGA1_c10870 0.83 +0.8 1,123,936 + PGA1_c10870 0.87 -0.8 1,123,943 - PGA1_c10870 0.88 +1.6 1,124,042 + +0.5 1,124,065 + -3.6 1,124,130 + +0.3 1,124,199 - PGA1_c10880 0.16 -3.5 1,124,217 + PGA1_c10880 0.18 -1.9 1,124,218 - PGA1_c10880 0.18 -3.3 1,124,225 - PGA1_c10880 0.18 -1.0 1,124,225 - PGA1_c10880 0.18 -3.4 1,124,328 + PGA1_c10880 0.28 -2.9 1,124,336 - PGA1_c10880 0.29 -1.4 1,124,367 + PGA1_c10880 0.32 -2.6 1,124,367 + PGA1_c10880 0.32 -2.0 1,124,485 - PGA1_c10880 0.43 -2.4 1,124,530 + PGA1_c10880 0.48 -2.9 1,124,537 + PGA1_c10880 0.48 -1.4 1,124,537 + PGA1_c10880 0.48 -1.7 1,124,545 - PGA1_c10880 0.49 -3.2 1,124,545 - PGA1_c10880 0.49 -3.6 1,124,547 + PGA1_c10880 0.49 -2.1 1,124,555 - PGA1_c10880 0.50 -2.0 1,124,581 - PGA1_c10880 0.53 -2.1 1,124,723 - PGA1_c10880 0.66 -3.1 1,124,815 + PGA1_c10880 0.75 -2.6 1,124,874 + PGA1_c10880 0.81 -2.0 1,124,921 + PGA1_c10880 0.85 -1.0 1,124,929 - PGA1_c10880 0.86 -3.1 1,124,939 - PGA1_c10880 0.87 -2.3 1,124,972 + -1.2 1,124,972 + -3.8 1,125,018 + -2.7 1,125,025 + -3.0 1,125,078 + +0.6 1,125,078 + -2.3 1,125,078 + -0.2 1,125,078 + -0.9 1,125,078 + +0.1 1,125,086 - +0.6 1,125,086 - +1.1 1,125,086 - -0.5 1,125,086 - -0.9 1,125,101 + -0.2 1,125,101 + +0.6 1,125,109 - -1.4 1,125,109 - +0.3 1,125,249 + +0.9 1,125,257 + +1.3 1,125,257 + +1.0 1,125,257 + -0.2 1,125,257 + +0.8 1,125,257 + -0.1 1,125,257 + -0.1 1,125,257 + +0.2 1,125,257 - -0.2 1,125,257 - -0.4 1,125,257 - -0.6 1,125,265 - -2.5 1,125,265 - +0.7 1,125,265 - +0.6 1,125,265 - +0.3 1,125,265 - -0.5 1,125,265 - +0.7 1,125,265 - -0.6 1,125,265 - +1.8 1,125,277 - +0.5 1,125,277 - +0.6 1,125,330 + -1.9 1,125,330 + +1.1
Or see this region's nucleotide sequence