Experiment: BG11 with Chloride 15.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0734 and Synpcc7942_0735 are separated by 47 nucleotides Synpcc7942_0735 and Synpcc7942_0736 are separated by 5 nucleotides Synpcc7942_0736 and Synpcc7942_0737 overlap by 8 nucleotides Synpcc7942_0737 and Synpcc7942_0738 are separated by 333 nucleotides
Synpcc7942_0734: Synpcc7942_0734 - hypothetical protein, at 729,177 to 731,051
_0734
Synpcc7942_0735: Synpcc7942_0735 - hypothetical protein, at 731,099 to 731,428
_0735
Synpcc7942_0736: Synpcc7942_0736 - electron transfer protein, at 731,434 to 731,745
_0736
Synpcc7942_0737: Synpcc7942_0737 - hypothetical protein, at 731,738 to 732,376
_0737
Synpcc7942_0738: Synpcc7942_0738 - Phage baseplate assembly protein V, at 732,710 to 733,270
_0738
Position (kb) 731
732 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 730.444 kb on + strand, within Synpcc7942_0734 at 730.553 kb on + strand, within Synpcc7942_0734 at 730.555 kb on - strand, within Synpcc7942_0734 at 730.576 kb on + strand, within Synpcc7942_0734 at 730.578 kb on + strand at 730.581 kb on + strand, within Synpcc7942_0734 at 730.581 kb on + strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.584 kb on - strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.586 kb on + strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.589 kb on - strand, within Synpcc7942_0734 at 730.591 kb on + strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.594 kb on - strand, within Synpcc7942_0734 at 730.600 kb on + strand, within Synpcc7942_0734 at 730.608 kb on - strand, within Synpcc7942_0734 at 730.608 kb on - strand, within Synpcc7942_0734 at 730.625 kb on + strand, within Synpcc7942_0734 at 730.625 kb on - strand, within Synpcc7942_0734 at 730.629 kb on - strand at 730.633 kb on - strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.637 kb on + strand, within Synpcc7942_0734 at 730.649 kb on - strand, within Synpcc7942_0734 at 730.659 kb on + strand, within Synpcc7942_0734 at 730.659 kb on - strand, within Synpcc7942_0734 at 730.677 kb on - strand, within Synpcc7942_0734 at 730.771 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.794 kb on - strand, within Synpcc7942_0734 at 730.835 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.853 kb on + strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.861 kb on - strand, within Synpcc7942_0734 at 730.868 kb on - strand at 730.876 kb on + strand at 730.876 kb on + strand at 730.889 kb on + strand at 730.897 kb on - strand at 730.897 kb on - strand at 730.911 kb on + strand at 730.912 kb on - strand at 730.912 kb on - strand at 730.967 kb on + strand at 730.975 kb on - strand at 730.975 kb on - strand at 730.975 kb on - strand at 731.021 kb on - strand at 731.021 kb on - strand at 731.032 kb on + strand at 731.040 kb on - strand at 731.040 kb on - strand at 731.040 kb on - strand at 731.047 kb on + strand at 731.057 kb on + strand at 731.060 kb on - strand at 731.060 kb on - strand at 731.064 kb on + strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.067 kb on - strand at 731.076 kb on + strand at 731.076 kb on + strand at 731.084 kb on - strand at 731.084 kb on - strand at 731.135 kb on - strand, within Synpcc7942_0735 at 731.135 kb on - strand, within Synpcc7942_0735 at 731.170 kb on - strand, within Synpcc7942_0735 at 731.171 kb on + strand, within Synpcc7942_0735 at 731.174 kb on - strand, within Synpcc7942_0735 at 731.184 kb on - strand, within Synpcc7942_0735 at 731.222 kb on + strand, within Synpcc7942_0735 at 731.255 kb on + strand, within Synpcc7942_0735 at 731.260 kb on + strand, within Synpcc7942_0735 at 731.260 kb on + strand, within Synpcc7942_0735 at 731.297 kb on - strand, within Synpcc7942_0735 at 731.304 kb on - strand, within Synpcc7942_0735 at 731.305 kb on + strand, within Synpcc7942_0735 at 731.378 kb on + strand, within Synpcc7942_0735 at 731.382 kb on + strand, within Synpcc7942_0735 at 731.382 kb on + strand, within Synpcc7942_0735 at 731.396 kb on + strand at 731.405 kb on - strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.423 kb on + strand at 731.431 kb on - strand at 731.431 kb on - strand at 731.437 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.441 kb on + strand at 731.442 kb on + strand at 731.449 kb on - strand at 731.449 kb on - strand at 731.449 kb on - strand at 731.454 kb on - strand at 731.464 kb on - strand at 731.502 kb on + strand at 731.521 kb on + strand, within Synpcc7942_0736 at 731.532 kb on + strand, within Synpcc7942_0736 at 731.547 kb on + strand, within Synpcc7942_0736 at 731.549 kb on - strand, within Synpcc7942_0736 at 731.556 kb on + strand, within Synpcc7942_0736 at 731.556 kb on + strand, within Synpcc7942_0736 at 731.564 kb on - strand, within Synpcc7942_0736 at 731.582 kb on + strand, within Synpcc7942_0736 at 731.584 kb on + strand, within Synpcc7942_0736 at 731.590 kb on - strand, within Synpcc7942_0736 at 731.621 kb on + strand, within Synpcc7942_0736 at 731.621 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.639 kb on + strand, within Synpcc7942_0736 at 731.646 kb on + strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.647 kb on - strand, within Synpcc7942_0736 at 731.659 kb on - strand, within Synpcc7942_0736 at 731.692 kb on - strand, within Synpcc7942_0736 at 731.738 kb on - strand at 731.748 kb on - strand at 731.764 kb on - strand at 731.775 kb on + strand at 731.788 kb on + strand at 731.789 kb on + strand at 731.789 kb on + strand at 731.794 kb on - strand at 731.797 kb on - strand at 731.799 kb on + strand at 731.801 kb on + strand at 731.824 kb on - strand, within Synpcc7942_0737 at 731.824 kb on - strand, within Synpcc7942_0737 at 731.875 kb on - strand, within Synpcc7942_0737 at 731.875 kb on - strand, within Synpcc7942_0737 at 731.890 kb on + strand, within Synpcc7942_0737 at 731.890 kb on - strand, within Synpcc7942_0737 at 731.903 kb on - strand, within Synpcc7942_0737 at 731.908 kb on - strand, within Synpcc7942_0737 at 731.913 kb on - strand, within Synpcc7942_0737 at 731.929 kb on - strand, within Synpcc7942_0737 at 731.930 kb on - strand, within Synpcc7942_0737 at 731.972 kb on + strand, within Synpcc7942_0737 at 731.972 kb on + strand, within Synpcc7942_0737 at 731.975 kb on - strand, within Synpcc7942_0737 at 731.981 kb on + strand, within Synpcc7942_0737 at 731.999 kb on + strand, within Synpcc7942_0737 at 732.002 kb on - strand, within Synpcc7942_0737 at 732.007 kb on - strand, within Synpcc7942_0737 at 732.015 kb on - strand, within Synpcc7942_0737 at 732.043 kb on + strand, within Synpcc7942_0737 at 732.056 kb on + strand, within Synpcc7942_0737 at 732.064 kb on - strand, within Synpcc7942_0737 at 732.064 kb on - strand, within Synpcc7942_0737 at 732.066 kb on + strand, within Synpcc7942_0737 at 732.076 kb on - strand, within Synpcc7942_0737 at 732.101 kb on - strand, within Synpcc7942_0737 at 732.187 kb on + strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.195 kb on - strand, within Synpcc7942_0737 at 732.200 kb on - strand, within Synpcc7942_0737 at 732.230 kb on - strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.254 kb on + strand, within Synpcc7942_0737 at 732.259 kb on + strand, within Synpcc7942_0737 at 732.262 kb on - strand, within Synpcc7942_0737 at 732.262 kb on - strand, within Synpcc7942_0737 at 732.279 kb on + strand, within Synpcc7942_0737 at 732.295 kb on + strand, within Synpcc7942_0737 at 732.300 kb on + strand, within Synpcc7942_0737 at 732.303 kb on - strand, within Synpcc7942_0737 at 732.333 kb on + strand at 732.333 kb on + strand at 732.341 kb on - strand at 732.356 kb on + strand at 732.397 kb on + strand at 732.397 kb on + strand at 732.407 kb on + strand at 732.407 kb on + strand at 732.407 kb on + strand at 732.442 kb on + strand at 732.450 kb on - strand at 732.465 kb on - strand at 732.483 kb on + strand at 732.483 kb on + strand at 732.489 kb on - strand at 732.509 kb on + strand at 732.527 kb on - strand at 732.527 kb on - strand at 732.527 kb on - strand at 732.529 kb on - strand at 732.534 kb on - strand at 732.534 kb on - strand at 732.551 kb on - strand at 732.551 kb on - strand at 732.551 kb on - strand at 732.558 kb on - strand at 732.592 kb on + strand at 732.604 kb on + strand at 732.607 kb on - strand at 732.642 kb on - strand at 732.669 kb on + strand at 732.677 kb on + strand at 732.680 kb on - strand at 732.685 kb on + strand at 732.690 kb on + strand at 732.693 kb on - strand at 732.700 kb on + strand at 732.706 kb on + strand at 732.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 15.625 mM remove 730,444 + Synpcc7942_0734 0.68 -0.8 730,553 + Synpcc7942_0734 0.73 +0.0 730,555 - Synpcc7942_0734 0.73 -0.3 730,576 + Synpcc7942_0734 0.75 +0.7 730,578 + +1.2 730,581 + Synpcc7942_0734 0.75 -1.0 730,581 + Synpcc7942_0734 0.75 +1.6 730,584 - Synpcc7942_0734 0.75 -0.1 730,584 - Synpcc7942_0734 0.75 +0.4 730,584 - Synpcc7942_0734 0.75 -1.0 730,586 + Synpcc7942_0734 0.75 -1.2 730,586 + Synpcc7942_0734 0.75 +0.6 730,586 + Synpcc7942_0734 0.75 -0.2 730,586 + Synpcc7942_0734 0.75 -0.1 730,586 + Synpcc7942_0734 0.75 +0.2 730,586 + Synpcc7942_0734 0.75 -0.7 730,589 - Synpcc7942_0734 0.75 +0.3 730,589 - Synpcc7942_0734 0.75 +0.5 730,589 - Synpcc7942_0734 0.75 -2.1 730,589 - Synpcc7942_0734 0.75 +1.2 730,591 + Synpcc7942_0734 0.75 +1.2 730,594 - Synpcc7942_0734 0.76 -0.3 730,594 - Synpcc7942_0734 0.76 -1.3 730,594 - +1.7 730,594 - Synpcc7942_0734 0.76 +0.2 730,594 - Synpcc7942_0734 0.76 +2.7 730,594 - Synpcc7942_0734 0.76 +0.2 730,600 + Synpcc7942_0734 0.76 +0.1 730,608 - Synpcc7942_0734 0.76 -0.7 730,608 - Synpcc7942_0734 0.76 -0.2 730,625 + Synpcc7942_0734 0.77 -1.2 730,625 - Synpcc7942_0734 0.77 +0.0 730,629 - +5.5 730,633 - Synpcc7942_0734 0.78 -0.1 730,637 + Synpcc7942_0734 0.78 -0.1 730,637 + Synpcc7942_0734 0.78 +0.4 730,637 + Synpcc7942_0734 0.78 +0.5 730,649 - Synpcc7942_0734 0.79 -0.9 730,659 + Synpcc7942_0734 0.79 -0.1 730,659 - Synpcc7942_0734 0.79 +1.3 730,677 - Synpcc7942_0734 0.80 +0.6 730,771 - Synpcc7942_0734 0.85 +0.4 730,794 - Synpcc7942_0734 0.86 -0.9 730,794 - Synpcc7942_0734 0.86 -2.8 730,794 - Synpcc7942_0734 0.86 -0.6 730,835 + Synpcc7942_0734 0.88 +0.0 730,853 + Synpcc7942_0734 0.89 -0.8 730,853 + Synpcc7942_0734 0.89 +0.1 730,853 + Synpcc7942_0734 0.89 -3.1 730,861 - Synpcc7942_0734 0.90 -0.5 730,861 - Synpcc7942_0734 0.90 -0.4 730,861 - Synpcc7942_0734 0.90 -1.6 730,868 - -4.0 730,876 + -0.5 730,876 + -1.5 730,889 + -1.3 730,897 - -1.3 730,897 - -0.4 730,911 + -0.6 730,912 - -1.0 730,912 - -0.1 730,967 + +0.2 730,975 - +0.2 730,975 - +1.0 730,975 - -0.3 731,021 - +2.0 731,021 - -1.4 731,032 + +0.0 731,040 - +0.2 731,040 - -0.3 731,040 - -0.6 731,047 + -1.6 731,057 + -0.8 731,060 - -1.4 731,060 - +0.2 731,064 + -0.3 731,067 - +0.3 731,067 - -1.0 731,067 - -0.7 731,067 - -0.8 731,076 + -1.6 731,076 + -1.8 731,084 - -1.6 731,084 - -2.3 731,135 - Synpcc7942_0735 0.11 -2.0 731,135 - Synpcc7942_0735 0.11 -2.2 731,170 - Synpcc7942_0735 0.22 -1.0 731,171 + Synpcc7942_0735 0.22 +0.9 731,174 - Synpcc7942_0735 0.23 +2.2 731,184 - Synpcc7942_0735 0.26 -1.4 731,222 + Synpcc7942_0735 0.37 -2.3 731,255 + Synpcc7942_0735 0.47 -0.4 731,260 + Synpcc7942_0735 0.49 -1.7 731,260 + Synpcc7942_0735 0.49 +1.7 731,297 - Synpcc7942_0735 0.60 -0.7 731,304 - Synpcc7942_0735 0.62 -0.8 731,305 + Synpcc7942_0735 0.62 -0.3 731,378 + Synpcc7942_0735 0.85 -0.1 731,382 + Synpcc7942_0735 0.86 +0.9 731,382 + Synpcc7942_0735 0.86 +0.9 731,396 + +0.0 731,405 - +0.6 731,423 + -1.3 731,423 + -0.1 731,423 + +0.7 731,423 + -1.3 731,423 + -1.9 731,423 + +1.0 731,423 + -1.1 731,423 + +0.0 731,423 + -0.0 731,423 + +0.4 731,431 - -0.3 731,431 - -0.9 731,437 + -0.7 731,441 + -1.1 731,441 + +0.8 731,441 + -0.0 731,441 + -0.9 731,442 + -0.6 731,449 - +1.1 731,449 - -1.1 731,449 - +0.1 731,454 - -0.7 731,464 - -0.6 731,502 + +0.4 731,521 + Synpcc7942_0736 0.28 -1.4 731,532 + Synpcc7942_0736 0.31 -0.3 731,547 + Synpcc7942_0736 0.36 -1.4 731,549 - Synpcc7942_0736 0.37 +0.1 731,556 + Synpcc7942_0736 0.39 +0.5 731,556 + Synpcc7942_0736 0.39 -1.5 731,564 - Synpcc7942_0736 0.42 -2.0 731,582 + Synpcc7942_0736 0.47 -1.3 731,584 + Synpcc7942_0736 0.48 -0.7 731,590 - Synpcc7942_0736 0.50 -0.6 731,621 + Synpcc7942_0736 0.60 +1.4 731,621 + Synpcc7942_0736 0.60 +0.3 731,639 + Synpcc7942_0736 0.66 -1.6 731,639 + Synpcc7942_0736 0.66 +1.0 731,639 + Synpcc7942_0736 0.66 -2.0 731,646 + Synpcc7942_0736 0.68 -0.6 731,647 - Synpcc7942_0736 0.68 +1.1 731,647 - Synpcc7942_0736 0.68 +2.1 731,647 - Synpcc7942_0736 0.68 -1.5 731,647 - Synpcc7942_0736 0.68 -2.4 731,659 - Synpcc7942_0736 0.72 +1.0 731,692 - Synpcc7942_0736 0.83 -1.5 731,738 - -1.1 731,748 - -2.4 731,764 - -1.3 731,775 + +0.1 731,788 + -0.4 731,789 + -1.0 731,789 + -1.7 731,794 - -0.2 731,797 - -3.4 731,799 + +0.4 731,801 + +0.7 731,824 - Synpcc7942_0737 0.13 +0.1 731,824 - Synpcc7942_0737 0.13 -0.7 731,875 - Synpcc7942_0737 0.21 +0.7 731,875 - Synpcc7942_0737 0.21 +1.1 731,890 + Synpcc7942_0737 0.24 -1.4 731,890 - Synpcc7942_0737 0.24 -0.7 731,903 - Synpcc7942_0737 0.26 +0.4 731,908 - Synpcc7942_0737 0.27 -1.9 731,913 - Synpcc7942_0737 0.27 +1.0 731,929 - Synpcc7942_0737 0.30 -1.9 731,930 - Synpcc7942_0737 0.30 -3.2 731,972 + Synpcc7942_0737 0.37 +0.4 731,972 + Synpcc7942_0737 0.37 +1.2 731,975 - Synpcc7942_0737 0.37 -2.1 731,981 + Synpcc7942_0737 0.38 +1.7 731,999 + Synpcc7942_0737 0.41 +0.4 732,002 - Synpcc7942_0737 0.41 +0.7 732,007 - Synpcc7942_0737 0.42 -2.9 732,015 - Synpcc7942_0737 0.43 +1.7 732,043 + Synpcc7942_0737 0.48 +1.0 732,056 + Synpcc7942_0737 0.50 -0.7 732,064 - Synpcc7942_0737 0.51 -0.5 732,064 - Synpcc7942_0737 0.51 +1.4 732,066 + Synpcc7942_0737 0.51 -0.3 732,076 - Synpcc7942_0737 0.53 -0.3 732,101 - Synpcc7942_0737 0.57 -0.6 732,187 + Synpcc7942_0737 0.70 -0.0 732,195 - Synpcc7942_0737 0.72 +1.4 732,195 - Synpcc7942_0737 0.72 -0.2 732,195 - Synpcc7942_0737 0.72 +0.8 732,200 - Synpcc7942_0737 0.72 -0.5 732,230 - Synpcc7942_0737 0.77 +0.4 732,254 + Synpcc7942_0737 0.81 +0.7 732,254 + Synpcc7942_0737 0.81 +0.6 732,254 + Synpcc7942_0737 0.81 -0.3 732,259 + Synpcc7942_0737 0.82 +1.9 732,262 - Synpcc7942_0737 0.82 -0.1 732,262 - Synpcc7942_0737 0.82 -1.3 732,279 + Synpcc7942_0737 0.85 -0.3 732,295 + Synpcc7942_0737 0.87 -2.2 732,300 + Synpcc7942_0737 0.88 -1.0 732,303 - Synpcc7942_0737 0.88 -2.8 732,333 + -1.3 732,333 + -2.0 732,341 - +0.8 732,356 + -0.4 732,397 + -1.9 732,397 + -0.2 732,407 + +1.0 732,407 + +0.5 732,407 + +0.7 732,442 + +0.6 732,450 - -1.5 732,465 - +0.2 732,483 + -0.3 732,483 + -1.4 732,489 - -1.2 732,509 + +0.0 732,527 - -0.9 732,527 - -0.7 732,527 - +1.2 732,529 - -2.6 732,534 - -0.6 732,534 - +0.3 732,551 - -0.1 732,551 - -0.4 732,551 - -0.6 732,558 - -0.8 732,592 + +1.5 732,604 + +1.4 732,607 - -1.1 732,642 - -2.0 732,669 + +0.3 732,677 + +0.2 732,680 - -0.6 732,685 + -0.9 732,690 + +0.4 732,693 - +0.4 732,700 + -0.6 732,706 + -0.6 732,724 - -2.2
Or see this region's nucleotide sequence