Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0522

Experiment: BG11 with Chloride 15.625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0521 and Synpcc7942_0522 are separated by 518 nucleotidesSynpcc7942_0522 and Synpcc7942_0523 are separated by 1 nucleotidesSynpcc7942_0523 and Synpcc7942_0524 are separated by 91 nucleotidesSynpcc7942_0524 and aroB are separated by 23 nucleotides Synpcc7942_0521: Synpcc7942_0521 - hypothetical protein, at 506,835 to 507,422 _0521 Synpcc7942_0522: Synpcc7942_0522 - hypothetical protein, at 507,941 to 508,312 _0522 Synpcc7942_0523: Synpcc7942_0523 - hypothetical protein, at 508,314 to 508,703 _0523 Synpcc7942_0524: Synpcc7942_0524 - hypothetical protein, at 508,795 to 509,202 _0524 Synpcc7942_0525: aroB - 3-dehydroquinate synthase, at 509,226 to 510,332 aroB Position (kb) 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 506.942 kb on + strand, within Synpcc7942_0521at 506.945 kb on - strand, within Synpcc7942_0521at 506.957 kb on + strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.967 kb on + strand, within Synpcc7942_0521at 506.972 kb on + strand, within Synpcc7942_0521at 506.977 kb on + strand, within Synpcc7942_0521at 506.982 kb on + strand, within Synpcc7942_0521at 506.985 kb on - strand, within Synpcc7942_0521at 506.990 kb on - strand, within Synpcc7942_0521at 507.007 kb on + strand, within Synpcc7942_0521at 507.012 kb on + strand, within Synpcc7942_0521at 507.020 kb on - strand, within Synpcc7942_0521at 507.022 kb on + strand, within Synpcc7942_0521at 507.043 kb on - strand, within Synpcc7942_0521at 507.057 kb on + strand, within Synpcc7942_0521at 507.067 kb on - strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.095 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.162 kb on + strand, within Synpcc7942_0521at 507.207 kb on + strand, within Synpcc7942_0521at 507.232 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.252 kb on + strand, within Synpcc7942_0521at 507.270 kb on - strand, within Synpcc7942_0521at 507.287 kb on - strand, within Synpcc7942_0521at 507.327 kb on - strand, within Synpcc7942_0521at 507.330 kb on - strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.353 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.371 kb on + strandat 507.379 kb on - strandat 507.386 kb on - strandat 507.386 kb on - strandat 507.393 kb on + strandat 507.549 kb on - strandat 507.559 kb on - strandat 507.618 kb on + strandat 507.719 kb on + strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.745 kb on + strandat 507.755 kb on + strandat 507.755 kb on + strandat 507.763 kb on - strandat 507.836 kb on + strandat 507.989 kb on + strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 508.018 kb on + strand, within Synpcc7942_0522at 508.032 kb on + strand, within Synpcc7942_0522at 508.032 kb on + strand, within Synpcc7942_0522at 508.042 kb on + strand, within Synpcc7942_0522at 508.072 kb on + strand, within Synpcc7942_0522at 508.078 kb on - strand, within Synpcc7942_0522at 508.089 kb on + strand, within Synpcc7942_0522at 508.098 kb on + strand, within Synpcc7942_0522at 508.098 kb on - strand, within Synpcc7942_0522at 508.108 kb on + strand, within Synpcc7942_0522at 508.116 kb on + strand, within Synpcc7942_0522at 508.116 kb on + strand, within Synpcc7942_0522at 508.116 kb on - strand, within Synpcc7942_0522at 508.124 kb on - strand, within Synpcc7942_0522at 508.124 kb on - strand, within Synpcc7942_0522at 508.149 kb on - strand, within Synpcc7942_0522at 508.216 kb on - strand, within Synpcc7942_0522at 508.248 kb on - strand, within Synpcc7942_0522at 508.253 kb on + strand, within Synpcc7942_0522at 508.346 kb on + strandat 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strandat 508.399 kb on + strand, within Synpcc7942_0523at 508.411 kb on - strand, within Synpcc7942_0523at 508.418 kb on - strand, within Synpcc7942_0523at 508.431 kb on + strand, within Synpcc7942_0523at 508.454 kb on + strand, within Synpcc7942_0523at 508.474 kb on + strand, within Synpcc7942_0523at 508.482 kb on - strand, within Synpcc7942_0523at 508.482 kb on - strand, within Synpcc7942_0523at 508.546 kb on - strand, within Synpcc7942_0523at 508.605 kb on + strand, within Synpcc7942_0523at 508.605 kb on + strand, within Synpcc7942_0523at 508.626 kb on - strand, within Synpcc7942_0523at 508.660 kb on - strand, within Synpcc7942_0523at 508.660 kb on - strand, within Synpcc7942_0523at 508.660 kb on - strandat 508.711 kb on + strandat 508.717 kb on - strandat 508.758 kb on + strandat 508.758 kb on + strandat 508.758 kb on + strandat 508.758 kb on + strandat 508.766 kb on - strandat 508.766 kb on - strandat 508.766 kb on - strandat 508.766 kb on - strandat 508.810 kb on - strandat 508.855 kb on - strand, within Synpcc7942_0524at 508.855 kb on - strand, within Synpcc7942_0524at 508.885 kb on + strand, within Synpcc7942_0524at 508.910 kb on - strand, within Synpcc7942_0524at 508.910 kb on - strand, within Synpcc7942_0524at 508.919 kb on + strand, within Synpcc7942_0524at 508.927 kb on - strand, within Synpcc7942_0524at 508.927 kb on - strand, within Synpcc7942_0524at 508.934 kb on + strand, within Synpcc7942_0524at 508.966 kb on + strand, within Synpcc7942_0524at 509.019 kb on - strand, within Synpcc7942_0524at 509.024 kb on + strand, within Synpcc7942_0524at 509.079 kb on + strand, within Synpcc7942_0524at 509.103 kb on - strand, within Synpcc7942_0524at 509.120 kb on + strand, within Synpcc7942_0524at 509.120 kb on + strand, within Synpcc7942_0524at 509.120 kb on + strand, within Synpcc7942_0524at 509.128 kb on - strand, within Synpcc7942_0524at 509.130 kb on - strand, within Synpcc7942_0524at 509.143 kb on - strand, within Synpcc7942_0524at 509.153 kb on + strand, within Synpcc7942_0524at 509.154 kb on + strand, within Synpcc7942_0524at 509.190 kb on + strandat 509.207 kb on - strandat 509.222 kb on + strandat 509.223 kb on + strandat 509.223 kb on + strandat 509.223 kb on + strandat 509.223 kb on + strandat 509.223 kb on + strandat 509.224 kb on + strandat 509.230 kb on - strandat 509.231 kb on - strandat 509.231 kb on - strandat 509.232 kb on - strandat 509.232 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 15.625 mM
remove
506,942 + Synpcc7942_0521 0.18 +0.9
506,945 - Synpcc7942_0521 0.19 -2.3
506,957 + Synpcc7942_0521 0.21 -1.9
506,965 - Synpcc7942_0521 0.22 +1.2
506,965 - Synpcc7942_0521 0.22 -1.5
506,967 + Synpcc7942_0521 0.22 -0.1
506,972 + Synpcc7942_0521 0.23 +0.5
506,977 + Synpcc7942_0521 0.24 +0.8
506,982 + Synpcc7942_0521 0.25 -0.9
506,985 - Synpcc7942_0521 0.26 -1.5
506,990 - Synpcc7942_0521 0.26 +2.1
507,007 + Synpcc7942_0521 0.29 -0.3
507,012 + Synpcc7942_0521 0.30 +0.4
507,020 - Synpcc7942_0521 0.31 -1.1
507,022 + Synpcc7942_0521 0.32 -0.2
507,043 - Synpcc7942_0521 0.35 -0.5
507,057 + Synpcc7942_0521 0.38 -0.8
507,067 - Synpcc7942_0521 0.39 -0.3
507,077 + Synpcc7942_0521 0.41 -0.8
507,077 + Synpcc7942_0521 0.41 -0.6
507,095 - Synpcc7942_0521 0.44 -0.7
507,135 - Synpcc7942_0521 0.51 +0.0
507,135 - Synpcc7942_0521 0.51 -0.2
507,162 + Synpcc7942_0521 0.56 +0.2
507,207 + Synpcc7942_0521 0.63 +0.2
507,232 + Synpcc7942_0521 0.68 +0.5
507,239 + Synpcc7942_0521 0.69 -0.1
507,239 + Synpcc7942_0521 0.69 -1.5
507,252 + Synpcc7942_0521 0.71 -0.8
507,270 - Synpcc7942_0521 0.74 -0.8
507,287 - Synpcc7942_0521 0.77 +1.1
507,327 - Synpcc7942_0521 0.84 +0.1
507,330 - Synpcc7942_0521 0.84 -0.5
507,344 + Synpcc7942_0521 0.87 -1.0
507,344 + Synpcc7942_0521 0.87 -0.1
507,353 + Synpcc7942_0521 0.88 +0.4
507,354 + Synpcc7942_0521 0.88 -0.6
507,354 + Synpcc7942_0521 0.88 +0.7
507,371 + -0.1
507,379 - -0.6
507,386 - -1.0
507,386 - -0.9
507,393 + -1.7
507,549 - -1.4
507,559 - +0.4
507,618 + -1.0
507,719 + +1.4
507,727 - +0.8
507,727 - -1.1
507,727 - -0.8
507,727 - -0.1
507,745 + +0.2
507,755 + -1.1
507,755 + -0.3
507,763 - +0.7
507,836 + -1.7
507,989 + Synpcc7942_0522 0.13 -2.0
507,997 - Synpcc7942_0522 0.15 -1.8
507,997 - Synpcc7942_0522 0.15 -1.0
507,997 - Synpcc7942_0522 0.15 -0.1
508,018 + Synpcc7942_0522 0.21 -2.1
508,032 + Synpcc7942_0522 0.24 +0.7
508,032 + Synpcc7942_0522 0.24 -1.5
508,042 + Synpcc7942_0522 0.27 -1.4
508,072 + Synpcc7942_0522 0.35 -0.5
508,078 - Synpcc7942_0522 0.37 -2.2
508,089 + Synpcc7942_0522 0.40 -0.9
508,098 + Synpcc7942_0522 0.42 +0.2
508,098 - Synpcc7942_0522 0.42 +1.3
508,108 + Synpcc7942_0522 0.45 -0.3
508,116 + Synpcc7942_0522 0.47 -0.7
508,116 + Synpcc7942_0522 0.47 +2.1
508,116 - Synpcc7942_0522 0.47 +1.1
508,124 - Synpcc7942_0522 0.49 -0.1
508,124 - Synpcc7942_0522 0.49 +1.0
508,149 - Synpcc7942_0522 0.56 +1.1
508,216 - Synpcc7942_0522 0.74 -0.2
508,248 - Synpcc7942_0522 0.83 -1.5
508,253 + Synpcc7942_0522 0.84 -1.7
508,346 + +0.8
508,386 + Synpcc7942_0523 0.18 +0.9
508,386 + Synpcc7942_0523 0.18 +3.7
508,386 + Synpcc7942_0523 0.18 -0.4
508,386 + Synpcc7942_0523 0.18 -0.9
508,394 - Synpcc7942_0523 0.21 -0.1
508,394 - Synpcc7942_0523 0.21 -0.5
508,394 - Synpcc7942_0523 0.21 +0.4
508,394 - Synpcc7942_0523 0.21 -1.1
508,394 - Synpcc7942_0523 0.21 -1.4
508,394 - Synpcc7942_0523 0.21 -0.8
508,394 - +0.7
508,399 + Synpcc7942_0523 0.22 +1.7
508,411 - Synpcc7942_0523 0.25 +0.2
508,418 - Synpcc7942_0523 0.27 +0.9
508,431 + Synpcc7942_0523 0.30 +0.0
508,454 + Synpcc7942_0523 0.36 +0.3
508,474 + Synpcc7942_0523 0.41 +0.5
508,482 - Synpcc7942_0523 0.43 +1.6
508,482 - Synpcc7942_0523 0.43 -0.8
508,546 - Synpcc7942_0523 0.59 -1.5
508,605 + Synpcc7942_0523 0.75 +1.1
508,605 + Synpcc7942_0523 0.75 -1.0
508,626 - Synpcc7942_0523 0.80 -2.9
508,660 - Synpcc7942_0523 0.89 -0.1
508,660 - Synpcc7942_0523 0.89 +0.5
508,660 - +0.4
508,711 + +1.0
508,717 - +0.8
508,758 + +1.7
508,758 + +1.2
508,758 + -3.1
508,758 + -0.7
508,766 - -0.6
508,766 - -0.5
508,766 - +0.1
508,766 - -1.6
508,810 - -0.1
508,855 - Synpcc7942_0524 0.15 -0.1
508,855 - Synpcc7942_0524 0.15 -1.4
508,885 + Synpcc7942_0524 0.22 +0.4
508,910 - Synpcc7942_0524 0.28 +0.7
508,910 - Synpcc7942_0524 0.28 +0.3
508,919 + Synpcc7942_0524 0.30 -0.2
508,927 - Synpcc7942_0524 0.32 -0.5
508,927 - Synpcc7942_0524 0.32 +0.4
508,934 + Synpcc7942_0524 0.34 -0.1
508,966 + Synpcc7942_0524 0.42 -1.7
509,019 - Synpcc7942_0524 0.55 -0.6
509,024 + Synpcc7942_0524 0.56 +1.7
509,079 + Synpcc7942_0524 0.70 +0.9
509,103 - Synpcc7942_0524 0.75 -1.0
509,120 + Synpcc7942_0524 0.80 -2.7
509,120 + Synpcc7942_0524 0.80 +1.5
509,120 + Synpcc7942_0524 0.80 +1.4
509,128 - Synpcc7942_0524 0.82 -1.4
509,130 - Synpcc7942_0524 0.82 -0.1
509,143 - Synpcc7942_0524 0.85 -0.6
509,153 + Synpcc7942_0524 0.88 -1.9
509,154 + Synpcc7942_0524 0.88 -1.7
509,190 + -0.9
509,207 - +0.8
509,222 + -0.3
509,223 + -0.5
509,223 + +1.1
509,223 + +0.1
509,223 + +1.7
509,223 + +0.0
509,224 + -3.0
509,230 - -1.4
509,231 - +0.6
509,231 - +0.2
509,232 - -0.7
509,232 - +1.4

Or see this region's nucleotide sequence