Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21835 and HSERO_RS21840 overlap by 4 nucleotides HSERO_RS21840 and HSERO_RS21845 are separated by 559 nucleotides HSERO_RS21845 and HSERO_RS21850 are separated by 218 nucleotides
HSERO_RS21835: HSERO_RS21835 - ATP synthase subunit A, at 4,998,998 to 4,999,819
_RS21835
HSERO_RS21840: HSERO_RS21840 - F0F1-type ATP synthase subunit I, at 4,999,816 to 5,000,160
_RS21840
HSERO_RS21845: HSERO_RS21845 - transcription regulator protein, at 5,000,720 to 5,002,177
_RS21845
HSERO_RS21850: HSERO_RS21850 - hypothetical protein, at 5,002,396 to 5,003,181
_RS21850
Position (kb) 5000
5001
5002
5003 Strain fitness (log2 ratio) -1
0
1
2
3 at 5000.269 kb on + strand at 5000.277 kb on - strand at 5000.291 kb on + strand at 5000.346 kb on - strand at 5000.377 kb on - strand at 5000.379 kb on + strand at 5000.412 kb on + strand at 5000.420 kb on - strand at 5000.449 kb on + strand at 5000.683 kb on + strand at 5000.696 kb on - strand at 5000.723 kb on + strand at 5000.860 kb on + strand at 5000.918 kb on - strand, within HSERO_RS21845 at 5000.963 kb on + strand, within HSERO_RS21845 at 5000.963 kb on + strand, within HSERO_RS21845 at 5001.183 kb on + strand, within HSERO_RS21845 at 5001.231 kb on + strand, within HSERO_RS21845 at 5001.239 kb on - strand, within HSERO_RS21845 at 5001.239 kb on - strand, within HSERO_RS21845 at 5001.273 kb on - strand, within HSERO_RS21845 at 5001.300 kb on + strand, within HSERO_RS21845 at 5001.590 kb on + strand, within HSERO_RS21845 at 5001.601 kb on + strand, within HSERO_RS21845 at 5001.765 kb on + strand, within HSERO_RS21845 at 5001.849 kb on + strand, within HSERO_RS21845 at 5002.014 kb on + strand, within HSERO_RS21845 at 5002.185 kb on + strand at 5002.267 kb on + strand at 5002.275 kb on - strand at 5002.302 kb on - strand at 5002.314 kb on + strand at 5002.369 kb on - strand at 5002.575 kb on + strand, within HSERO_RS21850 at 5002.590 kb on + strand, within HSERO_RS21850 at 5002.692 kb on + strand, within HSERO_RS21850 at 5002.953 kb on - strand, within HSERO_RS21850 at 5002.990 kb on + strand, within HSERO_RS21850 at 5003.022 kb on - strand, within HSERO_RS21850
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 5,000,269 + -0.3 5,000,277 - +0.1 5,000,291 + -0.1 5,000,346 - -0.2 5,000,377 - +0.0 5,000,379 + +3.5 5,000,412 + +1.6 5,000,420 - +0.7 5,000,449 + -0.9 5,000,683 + -0.2 5,000,696 - -0.9 5,000,723 + -0.2 5,000,860 + -0.1 5,000,918 - HSERO_RS21845 0.14 -0.2 5,000,963 + HSERO_RS21845 0.17 +0.4 5,000,963 + HSERO_RS21845 0.17 +0.3 5,001,183 + HSERO_RS21845 0.32 -0.5 5,001,231 + HSERO_RS21845 0.35 -0.2 5,001,239 - HSERO_RS21845 0.36 -0.0 5,001,239 - HSERO_RS21845 0.36 +1.6 5,001,273 - HSERO_RS21845 0.38 +1.6 5,001,300 + HSERO_RS21845 0.40 +0.3 5,001,590 + HSERO_RS21845 0.60 -0.9 5,001,601 + HSERO_RS21845 0.60 +0.3 5,001,765 + HSERO_RS21845 0.72 +0.7 5,001,849 + HSERO_RS21845 0.77 +0.3 5,002,014 + HSERO_RS21845 0.89 +0.6 5,002,185 + -1.3 5,002,267 + -0.2 5,002,275 - -0.7 5,002,302 - -0.2 5,002,314 + -0.9 5,002,369 - -0.6 5,002,575 + HSERO_RS21850 0.23 +0.1 5,002,590 + HSERO_RS21850 0.25 -0.0 5,002,692 + HSERO_RS21850 0.38 +1.5 5,002,953 - HSERO_RS21850 0.71 +0.5 5,002,990 + HSERO_RS21850 0.76 -0.9 5,003,022 - HSERO_RS21850 0.80 +0.1
Or see this region's nucleotide sequence