Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20335 and HSERO_RS20340 overlap by 26 nucleotides HSERO_RS20340 and HSERO_RS20345 are separated by 4 nucleotides HSERO_RS20345 and HSERO_RS20350 are separated by 44 nucleotides HSERO_RS20350 and HSERO_RS20355 are separated by 29 nucleotides
HSERO_RS20335: HSERO_RS20335 - histidinol-phosphate aminotransferase, at 4,660,097 to 4,661,215
_RS20335
HSERO_RS20340: HSERO_RS20340 - DNA methylase N-4, at 4,661,190 to 4,662,020
_RS20340
HSERO_RS20345: HSERO_RS20345 - histidinol dehydrogenase, at 4,662,025 to 4,663,341
_RS20345
HSERO_RS20350: HSERO_RS20350 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 4,663,386 to 4,664,036
_RS20350
HSERO_RS20355: HSERO_RS20355 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,664,066 to 4,665,316
_RS20355
Position (kb) 4662
4663
4664 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4661.025 kb on + strand, within HSERO_RS20335 at 4661.096 kb on + strand, within HSERO_RS20335 at 4661.193 kb on + strand at 4661.230 kb on - strand at 4661.367 kb on + strand, within HSERO_RS20340 at 4661.447 kb on - strand, within HSERO_RS20340 at 4661.487 kb on - strand, within HSERO_RS20340 at 4661.550 kb on - strand, within HSERO_RS20340 at 4661.633 kb on + strand, within HSERO_RS20340 at 4661.704 kb on + strand, within HSERO_RS20340 at 4661.721 kb on - strand, within HSERO_RS20340 at 4661.760 kb on + strand, within HSERO_RS20340 at 4661.785 kb on + strand, within HSERO_RS20340 at 4661.785 kb on + strand, within HSERO_RS20340 at 4661.793 kb on - strand, within HSERO_RS20340 at 4661.793 kb on - strand, within HSERO_RS20340 at 4661.818 kb on + strand, within HSERO_RS20340 at 4661.818 kb on + strand, within HSERO_RS20340 at 4661.868 kb on + strand, within HSERO_RS20340 at 4662.040 kb on + strand at 4662.140 kb on + strand at 4662.217 kb on + strand, within HSERO_RS20345 at 4662.304 kb on + strand at 4662.307 kb on - strand, within HSERO_RS20345 at 4662.367 kb on + strand, within HSERO_RS20345 at 4662.791 kb on + strand, within HSERO_RS20345 at 4662.847 kb on - strand, within HSERO_RS20345 at 4663.330 kb on + strand at 4663.342 kb on + strand at 4663.355 kb on - strand at 4663.355 kb on - strand at 4663.377 kb on + strand at 4663.475 kb on + strand, within HSERO_RS20350 at 4663.504 kb on + strand, within HSERO_RS20350 at 4663.505 kb on - strand, within HSERO_RS20350 at 4663.540 kb on + strand, within HSERO_RS20350 at 4663.715 kb on + strand, within HSERO_RS20350 at 4664.010 kb on - strand at 4664.032 kb on - strand at 4664.117 kb on - strand at 4664.253 kb on + strand, within HSERO_RS20355
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 4,661,025 + HSERO_RS20335 0.83 -1.6 4,661,096 + HSERO_RS20335 0.89 -0.5 4,661,193 + -0.4 4,661,230 - +0.9 4,661,367 + HSERO_RS20340 0.21 -0.7 4,661,447 - HSERO_RS20340 0.31 -0.6 4,661,487 - HSERO_RS20340 0.36 +0.4 4,661,550 - HSERO_RS20340 0.43 -0.1 4,661,633 + HSERO_RS20340 0.53 +2.5 4,661,704 + HSERO_RS20340 0.62 +0.5 4,661,721 - HSERO_RS20340 0.64 +1.6 4,661,760 + HSERO_RS20340 0.69 -0.2 4,661,785 + HSERO_RS20340 0.72 +0.2 4,661,785 + HSERO_RS20340 0.72 +0.5 4,661,793 - HSERO_RS20340 0.73 +0.7 4,661,793 - HSERO_RS20340 0.73 +0.5 4,661,818 + HSERO_RS20340 0.76 +0.2 4,661,818 + HSERO_RS20340 0.76 +0.4 4,661,868 + HSERO_RS20340 0.82 +0.6 4,662,040 + -4.4 4,662,140 + -0.6 4,662,217 + HSERO_RS20345 0.15 -1.0 4,662,304 + -0.8 4,662,307 - HSERO_RS20345 0.21 -4.2 4,662,367 + HSERO_RS20345 0.26 -3.1 4,662,791 + HSERO_RS20345 0.58 -5.4 4,662,847 - HSERO_RS20345 0.62 -0.3 4,663,330 + -2.4 4,663,342 + -2.2 4,663,355 - -0.6 4,663,355 - +0.0 4,663,377 + -3.3 4,663,475 + HSERO_RS20350 0.14 +1.0 4,663,504 + HSERO_RS20350 0.18 -6.0 4,663,505 - HSERO_RS20350 0.18 -3.1 4,663,540 + HSERO_RS20350 0.24 -3.9 4,663,715 + HSERO_RS20350 0.51 -6.2 4,664,010 - -3.1 4,664,032 - -4.7 4,664,117 - +0.9 4,664,253 + HSERO_RS20355 0.15 -3.5
Or see this region's nucleotide sequence