Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18490 and HSERO_RS18495 overlap by 4 nucleotides HSERO_RS18495 and HSERO_RS18500 overlap by 4 nucleotides HSERO_RS18500 and HSERO_RS18505 overlap by 14 nucleotides
HSERO_RS18490: HSERO_RS18490 - AMP-binding protein, at 4,242,860 to 4,244,638
_RS18490
HSERO_RS18495: HSERO_RS18495 - glycosyl transferase, at 4,244,635 to 4,245,423
_RS18495
HSERO_RS18500: HSERO_RS18500 - acyltransferase, at 4,245,420 to 4,246,382
_RS18500
HSERO_RS18505: HSERO_RS18505 - histidine ammonia-lyase, at 4,246,369 to 4,247,949
_RS18505
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -1
0
1 at 4244.427 kb on - strand, within HSERO_RS18490 at 4244.440 kb on + strand, within HSERO_RS18490 at 4244.460 kb on - strand, within HSERO_RS18490 at 4244.534 kb on + strand at 4244.726 kb on + strand, within HSERO_RS18495 at 4244.726 kb on + strand, within HSERO_RS18495 at 4244.734 kb on - strand, within HSERO_RS18495 at 4244.782 kb on + strand, within HSERO_RS18495 at 4244.841 kb on + strand, within HSERO_RS18495 at 4244.855 kb on - strand, within HSERO_RS18495 at 4245.131 kb on - strand, within HSERO_RS18495 at 4245.241 kb on - strand, within HSERO_RS18495 at 4245.463 kb on - strand at 4245.486 kb on + strand at 4245.713 kb on + strand, within HSERO_RS18500 at 4245.736 kb on - strand, within HSERO_RS18500 at 4245.844 kb on - strand, within HSERO_RS18500 at 4246.172 kb on + strand, within HSERO_RS18500 at 4246.198 kb on + strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.409 kb on - strand at 4246.644 kb on + strand, within HSERO_RS18505 at 4246.883 kb on - strand, within HSERO_RS18505 at 4246.887 kb on + strand, within HSERO_RS18505 at 4247.019 kb on + strand, within HSERO_RS18505
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 4,244,427 - HSERO_RS18490 0.88 -0.1 4,244,440 + HSERO_RS18490 0.89 -0.9 4,244,460 - HSERO_RS18490 0.90 +0.1 4,244,534 + -1.5 4,244,726 + HSERO_RS18495 0.12 +0.1 4,244,726 + HSERO_RS18495 0.12 +0.5 4,244,734 - HSERO_RS18495 0.13 -0.0 4,244,782 + HSERO_RS18495 0.19 -0.4 4,244,841 + HSERO_RS18495 0.26 +0.4 4,244,855 - HSERO_RS18495 0.28 +0.5 4,245,131 - HSERO_RS18495 0.63 -0.5 4,245,241 - HSERO_RS18495 0.77 -1.4 4,245,463 - -0.4 4,245,486 + +0.3 4,245,713 + HSERO_RS18500 0.30 +0.6 4,245,736 - HSERO_RS18500 0.33 +0.0 4,245,844 - HSERO_RS18500 0.44 -0.0 4,246,172 + HSERO_RS18500 0.78 +0.1 4,246,198 + HSERO_RS18500 0.81 -0.3 4,246,258 - HSERO_RS18500 0.87 +0.1 4,246,258 - HSERO_RS18500 0.87 -0.4 4,246,409 - -0.6 4,246,644 + HSERO_RS18505 0.17 +0.5 4,246,883 - HSERO_RS18505 0.33 -0.3 4,246,887 + HSERO_RS18505 0.33 -0.3 4,247,019 + HSERO_RS18505 0.41 -0.2
Or see this region's nucleotide sequence