Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16800

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,844,332	+				+1.0
3,844,334	+				+0.5
3,844,347	+				-0.5
3,844,411	-				+0.5
3,844,600	+		HSERO_RS16795	0.14	-0.3
3,844,715	-		HSERO_RS16795	0.31	+0.9
3,844,729	+		HSERO_RS16795	0.33	+0.1
3,844,729	+		HSERO_RS16795	0.33	-0.4
3,844,729	+		HSERO_RS16795	0.33	-1.1
3,844,729	+		HSERO_RS16795	0.33	-0.1
3,844,729	+		HSERO_RS16795	0.33	-0.7
3,844,737	-		HSERO_RS16795	0.34	+0.6
3,844,737	-		HSERO_RS16795	0.34	-0.0
3,844,842	+		HSERO_RS16795	0.50	-0.3
3,844,915	+		HSERO_RS16795	0.61	+0.1
3,845,010	-		HSERO_RS16795	0.75	+0.2
3,845,024	+		HSERO_RS16795	0.77	-1.1
3,845,046	-		HSERO_RS16795	0.80	-0.3
3,845,092	+		HSERO_RS16795	0.87	+0.1
3,845,129	+				+1.2
3,845,318	-		HSERO_RS16800	0.29	+0.9
3,845,324	-		HSERO_RS16800	0.31	-0.8
3,845,440	+		HSERO_RS16800	0.62	+1.3
3,845,440	+		HSERO_RS16800	0.62	-0.1
3,845,448	-		HSERO_RS16800	0.64	-0.2
3,845,646	-		HSERO_RS16805	0.10	+0.1
3,845,658	+		HSERO_RS16805	0.12	-0.1
3,845,675	+		HSERO_RS16805	0.15	-0.1
3,845,683	-				+1.6
3,845,851	+		HSERO_RS16805	0.41	+0.1
3,845,871	-		HSERO_RS16805	0.44	+0.4
3,845,886	-		HSERO_RS16805	0.46	+0.0
3,845,921	-		HSERO_RS16805	0.52	+1.2
3,845,973	-		HSERO_RS16805	0.59	+1.7
3,845,995	-		HSERO_RS16805	0.63	+1.2
3,846,164	-		HSERO_RS16805	0.88	-0.1
3,846,414	-				+0.1
3,846,445	+				-0.0
3,846,473	+				-1.2
3,846,481	-				-0.2
3,846,510	+		HSERO_RS16810	0.12	-0.9
3,846,562	-		HSERO_RS16810	0.16	+0.7
3,846,578	+		HSERO_RS16810	0.17	+0.5