Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,842,717	+		HSERO_RS16785	0.15	-1.0
3,842,770	+		HSERO_RS16785	0.21	+0.9
3,842,843	+		HSERO_RS16785	0.28	-0.7
3,842,872	-		HSERO_RS16785	0.31	-0.4
3,842,889	-		HSERO_RS16785	0.32	-0.1
3,842,899	+		HSERO_RS16785	0.33	+0.6
3,842,918	+		HSERO_RS16785	0.35	+1.7
3,843,040	-		HSERO_RS16785	0.47	-0.0
3,843,372	+				-1.6
3,843,482	+				-0.2
3,843,539	-				+0.5
3,843,714	-		HSERO_RS16790	0.19	+0.9
3,843,768	+		HSERO_RS16790	0.27	+1.5
3,843,818	-		HSERO_RS16790	0.35	+0.9
3,843,881	+		HSERO_RS16790	0.45	-2.0
3,844,160	+		HSERO_RS16790	0.88	-0.3
3,844,332	+				+1.0
3,844,334	+				+0.5
3,844,347	+				-0.5
3,844,411	-				+0.5
3,844,600	+		HSERO_RS16795	0.14	-0.3
3,844,715	-		HSERO_RS16795	0.31	+0.9
3,844,729	+		HSERO_RS16795	0.33	+0.1
3,844,729	+		HSERO_RS16795	0.33	-0.4
3,844,729	+		HSERO_RS16795	0.33	-1.1
3,844,729	+		HSERO_RS16795	0.33	-0.1
3,844,729	+		HSERO_RS16795	0.33	-0.7
3,844,737	-		HSERO_RS16795	0.34	+0.6
3,844,737	-		HSERO_RS16795	0.34	-0.0
3,844,842	+		HSERO_RS16795	0.50	-0.3
3,844,915	+		HSERO_RS16795	0.61	+0.1
3,845,010	-		HSERO_RS16795	0.75	+0.2
3,845,024	+		HSERO_RS16795	0.77	-1.1
3,845,046	-		HSERO_RS16795	0.80	-0.3
3,845,092	+		HSERO_RS16795	0.87	+0.1
3,845,129	+				+1.2