Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS16775 and HSERO_RS16780 are separated by 173 nucleotides HSERO_RS16780 and HSERO_RS16785 are separated by 20 nucleotides HSERO_RS16785 and HSERO_RS16790 are separated by 24 nucleotides HSERO_RS16790 and HSERO_RS16795 are separated by 274 nucleotides
HSERO_RS16775: HSERO_RS16775 - hydratase, at 3,841,191 to 3,841,934
_RS16775
HSERO_RS16780: HSERO_RS16780 - MerR family transcriptional regulator, at 3,842,108 to 3,842,542
_RS16780
HSERO_RS16785: HSERO_RS16785 - aldo/keto reductase, at 3,842,563 to 3,843,570
_RS16785
HSERO_RS16790: HSERO_RS16790 - carbonic anhydrase, at 3,843,595 to 3,844,233
_RS16790
HSERO_RS16795: HSERO_RS16795 - curli production assembly protein CsgG, at 3,844,508 to 3,845,176
_RS16795
Position (kb)
3842
3843
3844 Strain fitness (log2 ratio)
-2
-1
0
1 at 3841.631 kb on + strand, within HSERO_RS16775 at 3841.830 kb on + strand, within HSERO_RS16775 at 3841.831 kb on + strand, within HSERO_RS16775 at 3841.968 kb on + strand at 3842.138 kb on + strand at 3842.159 kb on + strand, within HSERO_RS16780 at 3842.228 kb on + strand, within HSERO_RS16780 at 3842.238 kb on - strand, within HSERO_RS16780 at 3842.238 kb on - strand, within HSERO_RS16780 at 3842.314 kb on - strand, within HSERO_RS16780 at 3842.369 kb on + strand, within HSERO_RS16780 at 3842.377 kb on - strand, within HSERO_RS16780 at 3842.556 kb on - strand at 3842.717 kb on + strand, within HSERO_RS16785 at 3842.770 kb on + strand, within HSERO_RS16785 at 3842.843 kb on + strand, within HSERO_RS16785 at 3842.872 kb on - strand, within HSERO_RS16785 at 3842.889 kb on - strand, within HSERO_RS16785 at 3842.899 kb on + strand, within HSERO_RS16785 at 3842.918 kb on + strand, within HSERO_RS16785 at 3843.040 kb on - strand, within HSERO_RS16785 at 3843.372 kb on + strand at 3843.482 kb on + strand at 3843.539 kb on - strand at 3843.714 kb on - strand, within HSERO_RS16790 at 3843.768 kb on + strand, within HSERO_RS16790 at 3843.818 kb on - strand, within HSERO_RS16790 at 3843.881 kb on + strand, within HSERO_RS16790 at 3844.160 kb on + strand, within HSERO_RS16790 at 3844.332 kb on + strand at 3844.334 kb on + strand at 3844.347 kb on + strand at 3844.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 3,841,631 + HSERO_RS16775 0.59 +0.4 3,841,830 + HSERO_RS16775 0.86 +0.3 3,841,831 + HSERO_RS16775 0.86 -0.2 3,841,968 + -0.8 3,842,138 + +0.3 3,842,159 + HSERO_RS16780 0.12 +0.5 3,842,228 + HSERO_RS16780 0.28 -0.3 3,842,238 - HSERO_RS16780 0.30 -0.6 3,842,238 - HSERO_RS16780 0.30 -0.4 3,842,314 - HSERO_RS16780 0.47 -0.6 3,842,369 + HSERO_RS16780 0.60 -0.9 3,842,377 - HSERO_RS16780 0.62 -0.1 3,842,556 - -0.8 3,842,717 + HSERO_RS16785 0.15 -1.0 3,842,770 + HSERO_RS16785 0.21 +0.9 3,842,843 + HSERO_RS16785 0.28 -0.7 3,842,872 - HSERO_RS16785 0.31 -0.4 3,842,889 - HSERO_RS16785 0.32 -0.1 3,842,899 + HSERO_RS16785 0.33 +0.6 3,842,918 + HSERO_RS16785 0.35 +1.7 3,843,040 - HSERO_RS16785 0.47 -0.0 3,843,372 + -1.6 3,843,482 + -0.2 3,843,539 - +0.5 3,843,714 - HSERO_RS16790 0.19 +0.9 3,843,768 + HSERO_RS16790 0.27 +1.5 3,843,818 - HSERO_RS16790 0.35 +0.9 3,843,881 + HSERO_RS16790 0.45 -2.0 3,844,160 + HSERO_RS16790 0.88 -0.3 3,844,332 + +1.0 3,844,334 + +0.5 3,844,347 + -0.5 3,844,411 - +0.5
Or see this region's nucleotide sequence