Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16600

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,799,687	+		HSERO_RS16590	0.65	-0.3
3,799,892	-		HSERO_RS16590	0.81	-0.8
3,799,915	-		HSERO_RS16590	0.83	+0.4
3,799,943	+		HSERO_RS16590	0.85	-0.1
3,800,008	+				+0.0
3,800,388	+		HSERO_RS16595	0.88	-0.1
3,800,418	-				-0.3
3,800,424	+				+0.5
3,800,595	-				-0.4
3,800,628	+				+0.6
3,800,628	+				+1.1
3,800,917	+		HSERO_RS16600	0.26	-0.0
3,800,997	+		HSERO_RS16600	0.32	+0.0
3,801,016	-		HSERO_RS16600	0.33	-0.0
3,801,162	+		HSERO_RS16600	0.43	+0.1
3,801,321	+		HSERO_RS16600	0.55	+0.5
3,801,330	+		HSERO_RS16600	0.55	+0.2
3,801,378	+		HSERO_RS16600	0.59	-0.6
3,801,378	+		HSERO_RS16600	0.59	-0.4
3,801,386	-		HSERO_RS16600	0.59	+0.1
3,801,386	-		HSERO_RS16600	0.59	-0.3
3,801,424	-		HSERO_RS16600	0.62	-0.1
3,801,574	-		HSERO_RS16600	0.73	+0.0
3,801,664	-		HSERO_RS16600	0.79	+0.8
3,801,722	-		HSERO_RS16600	0.84	-0.2
3,801,751	+		HSERO_RS16600	0.86	-0.1
3,802,004	+				+1.1
3,802,009	+				+1.2
3,802,030	+				-0.5
3,802,150	+				-1.6
3,802,199	+		HSERO_RS16605	0.19	-0.6
3,802,207	-		HSERO_RS16605	0.20	+0.3
3,802,356	-		HSERO_RS16605	0.39	-4.2
3,802,419	+		HSERO_RS16605	0.48	-0.5
3,802,440	+		HSERO_RS16605	0.50	+0.8
3,802,455	-		HSERO_RS16605	0.52	-0.2
3,802,534	-		HSERO_RS16605	0.63	-0.3
3,802,557	-		HSERO_RS16605	0.66	-0.1
3,802,666	+		HSERO_RS16605	0.80	-0.5
3,802,830	-				+0.2
3,802,850	+				-0.1
3,802,873	-				+0.9