Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14635

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,312,711	+				-0.6
3,312,711	+				-0.6
3,312,903	+		HSERO_RS14630	0.39	-3.1
3,312,973	+		HSERO_RS14630	0.54	-1.3
3,313,016	+		HSERO_RS14630	0.64	-2.4
3,313,054	+		HSERO_RS14630	0.72	-1.8
3,313,054	+		HSERO_RS14630	0.72	-1.7
3,313,062	-		HSERO_RS14630	0.74	-1.2
3,313,119	-		HSERO_RS14630	0.86	-0.5
3,313,125	+		HSERO_RS14630	0.88	-0.7
3,313,177	-				-1.2
3,313,271	-				-0.5
3,313,321	+				-0.3
3,313,537	+				+0.6
3,313,693	-				+0.4
3,313,746	+		HSERO_RS14635	0.11	+0.8
3,313,978	+		HSERO_RS14635	0.26	+2.1
3,313,988	-		HSERO_RS14635	0.26	-0.3
3,314,093	+		HSERO_RS14635	0.33	-0.2
3,314,257	-		HSERO_RS14635	0.44	+0.4
3,314,306	+		HSERO_RS14635	0.47	-0.3
3,314,325	-		HSERO_RS14635	0.48	+1.5
3,314,407	-		HSERO_RS14635	0.54	+0.4
3,314,436	-		HSERO_RS14635	0.56	-0.5
3,314,518	+		HSERO_RS14635	0.61	+0.1
3,314,526	-		HSERO_RS14635	0.61	+0.1
3,314,717	+		HSERO_RS14635	0.74	+0.5
3,314,908	-		HSERO_RS14635	0.86	-0.4
3,314,985	-				+0.2
3,315,307	-				-0.7
3,315,333	-				-0.6
3,315,370	+				-0.5
3,315,438	-				-0.3
3,315,507	+				+0.0
3,315,515	-				+0.1
3,315,572	-		HSERO_RS14640	0.13	-1.1
3,315,641	-		HSERO_RS14640	0.17	-0.1
3,315,648	-		HSERO_RS14640	0.18	-0.6
3,315,798	+		HSERO_RS14640	0.27	-0.4
3,316,006	+		HSERO_RS14640	0.39	-1.2