Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14630

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
3,311,843	+		HSERO_RS14625	0.64	+0.3
3,312,340	-				-0.6
3,312,452	-				+2.2
3,312,454	-				-0.8
3,312,711	+				-0.6
3,312,711	+				-0.6
3,312,903	+		HSERO_RS14630	0.39	-3.1
3,312,973	+		HSERO_RS14630	0.54	-1.3
3,313,016	+		HSERO_RS14630	0.64	-2.4
3,313,054	+		HSERO_RS14630	0.72	-1.8
3,313,054	+		HSERO_RS14630	0.72	-1.7
3,313,062	-		HSERO_RS14630	0.74	-1.2
3,313,119	-		HSERO_RS14630	0.86	-0.5
3,313,125	+		HSERO_RS14630	0.88	-0.7
3,313,177	-				-1.2
3,313,271	-				-0.5
3,313,321	+				-0.3
3,313,537	+				+0.6
3,313,693	-				+0.4
3,313,746	+		HSERO_RS14635	0.11	+0.8
3,313,978	+		HSERO_RS14635	0.26	+2.1
3,313,988	-		HSERO_RS14635	0.26	-0.3
3,314,093	+		HSERO_RS14635	0.33	-0.2