Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12795

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,916,506	+		HSERO_RS12790	0.33	+0.5
2,916,506	+		HSERO_RS12790	0.33	-0.9
2,916,633	+		HSERO_RS12790	0.46	-0.6
2,916,685	+		HSERO_RS12790	0.51	+0.8
2,916,741	+		HSERO_RS12790	0.57	-0.2
2,916,817	-		HSERO_RS12790	0.64	-0.1
2,917,249	+				+0.2
2,917,274	+				+1.3
2,917,277	-				-0.6
2,917,398	+				+0.1
2,917,466	+				+0.1
2,917,485	+				-0.2
2,917,490	+		HSERO_RS12795	0.11	+0.2
2,917,519	-		HSERO_RS12795	0.25	+2.2
2,917,963	+				-0.9
2,918,139	-		HSERO_RS12800	0.11	-0.4
2,918,187	+		HSERO_RS12800	0.15	+0.2
2,918,268	-		HSERO_RS12800	0.21	+0.1
2,918,464	+		HSERO_RS12800	0.36	+0.7
2,918,472	-		HSERO_RS12800	0.37	+0.4
2,918,565	-		HSERO_RS12800	0.44	-1.0