Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12565

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,864,121	+		HSERO_RS12555	0.65	-0.4
2,864,165	+				-0.2
2,864,173	-		HSERO_RS12555	0.69	-2.8
2,864,434	-		HSERO_RS12555	0.89	-1.2
2,864,496	+				-0.6
2,864,661	-				-0.9
2,864,661	-				+1.1
2,864,727	-		HSERO_RS12560	0.13	+0.1
2,864,822	+		HSERO_RS12560	0.37	+0.4
2,864,844	+				-0.9
2,864,859	+		HSERO_RS12560	0.46	+1.8
2,864,962	+		HSERO_RS12560	0.72	-1.7
2,864,962	+		HSERO_RS12560	0.72	+0.3
2,864,970	-		HSERO_RS12560	0.74	+0.3
2,865,021	-		HSERO_RS12560	0.87	+1.0
2,865,086	+				+0.7
2,865,119	+		HSERO_RS12565	0.14	+0.3
2,865,133	-		HSERO_RS12565	0.18	-0.7
2,865,138	-		HSERO_RS12565	0.20	-0.3
2,865,393	-				+0.1
2,865,424	-				-0.4
2,865,507	-				-0.8
2,865,650	+				-3.8