Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12550

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,861,196	+		HSERO_RS12540	0.45	-0.0
2,861,285	-		HSERO_RS12540	0.66	+0.3
2,861,361	-		HSERO_RS12540	0.85	+0.1
2,861,424	-				-0.3
2,861,562	+				+0.1
2,861,563	-				+0.6
2,861,695	+		HSERO_RS12545	0.27	+0.8
2,861,730	-		HSERO_RS12545	0.37	-0.3
2,862,065	-		HSERO_RS12550	0.11	+0.8
2,862,196	+		HSERO_RS12550	0.24	-2.2
2,862,202	+		HSERO_RS12550	0.25	-0.8
2,862,319	+		HSERO_RS12550	0.37	+0.1
2,862,445	-		HSERO_RS12550	0.49	+0.1
2,862,534	+		HSERO_RS12550	0.58	-0.7
2,862,726	+		HSERO_RS12550	0.78	-0.7
2,862,827	+		HSERO_RS12550	0.88	+0.6
2,862,886	+				-0.1
2,862,911	+				+0.4
2,863,066	-				-0.6
2,863,082	+				-1.5
2,863,130	-				-2.0
2,863,260	+				-1.1
2,863,302	-				-1.2
2,863,325	+				-0.7
2,863,325	+				-2.5
2,863,325	+				-0.2
2,863,346	-				-1.7
2,863,450	-				-1.2
2,863,494	+		HSERO_RS12555	0.16	+0.1
2,863,494	+		HSERO_RS12555	0.16	-0.4
2,863,559	-		HSERO_RS12555	0.21	-0.9
2,863,595	-		HSERO_RS12555	0.24	-0.7
2,863,679	-		HSERO_RS12555	0.31	+0.3