Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05540

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,254,501	+		HSERO_RS05535	0.19	-0.9
1,254,695	-		HSERO_RS05535	0.41	-0.4
1,254,695	-		HSERO_RS05535	0.41	-0.8
1,254,729	-		HSERO_RS05535	0.45	-2.1
1,254,732	+		HSERO_RS05535	0.45	-0.6
1,255,204	+				+0.4
1,255,204	+				-0.9
1,255,259	-				+0.6
1,255,346	-				-0.1
1,255,378	+				+0.8
1,255,583	-		HSERO_RS05540	0.39	-2.6
1,255,614	+		HSERO_RS05540	0.49	+0.2
1,255,754	-				+0.4
1,255,781	+				-0.0
1,255,872	-				-1.3
1,255,958	-				-0.1
1,256,060	+		HSERO_RS05545	0.22	-0.3
1,256,141	+		HSERO_RS05545	0.30	+0.0
1,256,168	-		HSERO_RS05545	0.33	-0.4
1,256,277	+		HSERO_RS05545	0.44	-0.6
1,256,307	-		HSERO_RS05545	0.47	+0.1
1,256,418	-		HSERO_RS05545	0.58	-0.4
1,256,610	-		HSERO_RS05545	0.77	+0.6
1,256,623	-		HSERO_RS05545	0.78	+1.9
1,256,642	+		HSERO_RS05545	0.80	+0.7