Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02215 and HSERO_RS02220 are separated by 64 nucleotides HSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotides HSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotides
HSERO_RS02215: HSERO_RS02215 - D-arabinitol 4-dehydrogenase, at 483,460 to 484,893
_RS02215
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911
_RS02225
HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516
_RS02230
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 484.316 kb on - strand, within HSERO_RS02215 at 484.940 kb on - strand at 484.990 kb on + strand at 485.084 kb on - strand at 485.276 kb on - strand, within HSERO_RS02220 at 485.276 kb on - strand, within HSERO_RS02220 at 485.362 kb on + strand, within HSERO_RS02220 at 485.367 kb on + strand, within HSERO_RS02220 at 485.588 kb on + strand, within HSERO_RS02220 at 485.598 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.831 kb on - strand, within HSERO_RS02220 at 485.962 kb on + strand at 486.038 kb on - strand, within HSERO_RS02220 at 486.043 kb on - strand, within HSERO_RS02220 at 486.099 kb on + strand, within HSERO_RS02220 at 486.291 kb on + strand at 486.342 kb on - strand at 486.641 kb on + strand, within HSERO_RS02225 at 486.649 kb on - strand, within HSERO_RS02225 at 486.727 kb on + strand, within HSERO_RS02225 at 486.734 kb on - strand, within HSERO_RS02225 at 486.780 kb on + strand, within HSERO_RS02225 at 486.825 kb on - strand, within HSERO_RS02225 at 486.970 kb on - strand at 487.010 kb on + strand at 487.285 kb on + strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.426 kb on - strand, within HSERO_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 484,316 - HSERO_RS02215 0.60 +0.3 484,940 - +0.5 484,990 + -0.2 485,084 - +0.9 485,276 - HSERO_RS02220 0.22 +0.6 485,276 - HSERO_RS02220 0.22 +0.2 485,362 + HSERO_RS02220 0.27 +0.7 485,367 + HSERO_RS02220 0.28 +0.7 485,588 + HSERO_RS02220 0.43 +0.6 485,598 + HSERO_RS02220 0.43 +0.7 485,620 + HSERO_RS02220 0.45 +1.8 485,620 + HSERO_RS02220 0.45 +0.4 485,620 + HSERO_RS02220 0.45 +0.1 485,628 - HSERO_RS02220 0.45 +1.7 485,628 - HSERO_RS02220 0.45 +1.5 485,831 - HSERO_RS02220 0.59 -0.6 485,962 + -0.4 486,038 - HSERO_RS02220 0.73 +0.4 486,043 - HSERO_RS02220 0.74 +2.8 486,099 + HSERO_RS02220 0.77 -0.0 486,291 + +0.3 486,342 - -0.1 486,641 + HSERO_RS02225 0.41 +0.2 486,649 - HSERO_RS02225 0.43 -0.3 486,727 + HSERO_RS02225 0.60 -2.9 486,734 - HSERO_RS02225 0.61 -0.4 486,780 + HSERO_RS02225 0.71 -1.5 486,825 - HSERO_RS02225 0.81 -0.4 486,970 - -0.1 487,010 + +0.6 487,285 + HSERO_RS02230 0.21 -0.1 487,291 - HSERO_RS02230 0.22 -0.4 487,291 - HSERO_RS02230 0.22 +0.1 487,426 - HSERO_RS02230 0.30 +0.4
Or see this region's nucleotide sequence