Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08300 and PGA1_c08310 overlap by 4 nucleotides PGA1_c08310 and PGA1_c08320 are separated by 316 nucleotides PGA1_c08320 and PGA1_c08330 are separated by 93 nucleotides
PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858
_c08300
PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040
_c08310
PGA1_c08320: PGA1_c08320 - transcriptional regulator, LysR family, at 861,357 to 862,178
_c08320
PGA1_c08330: PGA1_c08330 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 862,272 to 863,183
_c08330
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 860.463 kb on + strand, within PGA1_c08300 at 860.516 kb on + strand, within PGA1_c08300 at 860.572 kb on + strand, within PGA1_c08300 at 860.580 kb on - strand, within PGA1_c08300 at 860.584 kb on + strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.673 kb on + strand, within PGA1_c08300 at 860.681 kb on - strand, within PGA1_c08300 at 860.693 kb on - strand, within PGA1_c08300 at 860.743 kb on - strand, within PGA1_c08300 at 860.764 kb on + strand, within PGA1_c08300 at 860.804 kb on + strand, within PGA1_c08300 at 860.814 kb on + strand at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.989 kb on + strand, within PGA1_c08310 at 860.991 kb on + strand, within PGA1_c08310 at 860.992 kb on - strand, within PGA1_c08310 at 861.034 kb on + strand at 861.037 kb on - strand at 861.085 kb on + strand at 861.093 kb on - strand at 861.223 kb on - strand at 861.233 kb on + strand at 861.238 kb on + strand at 861.241 kb on - strand at 861.243 kb on + strand at 861.245 kb on + strand at 861.253 kb on + strand at 861.253 kb on - strand at 861.261 kb on - strand at 861.326 kb on + strand at 861.366 kb on + strand at 861.366 kb on + strand at 861.366 kb on + strand at 861.367 kb on + strand at 861.374 kb on - strand at 861.377 kb on + strand at 861.425 kb on + strand at 861.436 kb on + strand at 861.438 kb on - strand at 861.444 kb on - strand, within PGA1_c08320 at 861.453 kb on - strand, within PGA1_c08320 at 861.545 kb on - strand, within PGA1_c08320 at 861.547 kb on + strand, within PGA1_c08320 at 861.555 kb on - strand, within PGA1_c08320 at 861.582 kb on + strand, within PGA1_c08320 at 861.735 kb on + strand, within PGA1_c08320 at 861.735 kb on + strand, within PGA1_c08320 at 861.743 kb on - strand, within PGA1_c08320 at 861.755 kb on + strand, within PGA1_c08320 at 861.800 kb on - strand, within PGA1_c08320 at 861.803 kb on + strand, within PGA1_c08320 at 861.803 kb on + strand, within PGA1_c08320 at 861.805 kb on + strand, within PGA1_c08320 at 861.811 kb on - strand, within PGA1_c08320 at 861.850 kb on - strand, within PGA1_c08320 at 861.868 kb on + strand, within PGA1_c08320 at 861.868 kb on + strand, within PGA1_c08320 at 861.921 kb on - strand, within PGA1_c08320 at 862.055 kb on + strand, within PGA1_c08320 at 862.063 kb on - strand, within PGA1_c08320 at 862.097 kb on + strand at 862.097 kb on + strand at 862.118 kb on + strand at 862.128 kb on + strand at 862.152 kb on + strand at 862.152 kb on + strand at 862.215 kb on - strand at 862.215 kb on - strand at 862.238 kb on + strand at 862.238 kb on + strand at 862.239 kb on + strand at 862.247 kb on - strand at 862.262 kb on + strand at 862.287 kb on - strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.313 kb on - strand at 862.336 kb on - strand at 862.380 kb on - strand, within PGA1_c08330 at 862.432 kb on + strand, within PGA1_c08330 at 862.440 kb on - strand, within PGA1_c08330 at 862.452 kb on - strand, within PGA1_c08330 at 862.555 kb on + strand, within PGA1_c08330 at 862.560 kb on + strand, within PGA1_c08330 at 862.569 kb on + strand, within PGA1_c08330 at 862.608 kb on + strand, within PGA1_c08330 at 862.613 kb on + strand, within PGA1_c08330 at 862.613 kb on + strand, within PGA1_c08330 at 862.621 kb on - strand, within PGA1_c08330 at 862.621 kb on - strand, within PGA1_c08330 at 862.621 kb on - strand, within PGA1_c08330 at 862.621 kb on - strand, within PGA1_c08330 at 862.622 kb on - strand, within PGA1_c08330 at 862.657 kb on + strand, within PGA1_c08330 at 862.729 kb on + strand, within PGA1_c08330 at 862.740 kb on + strand, within PGA1_c08330 at 862.781 kb on + strand, within PGA1_c08330 at 862.813 kb on + strand, within PGA1_c08330 at 862.856 kb on + strand, within PGA1_c08330 at 862.864 kb on - strand, within PGA1_c08330 at 862.902 kb on + strand, within PGA1_c08330 at 862.917 kb on - strand, within PGA1_c08330 at 862.932 kb on + strand, within PGA1_c08330 at 863.081 kb on + strand, within PGA1_c08330 at 863.081 kb on + strand, within PGA1_c08330 at 863.086 kb on + strand, within PGA1_c08330 at 863.094 kb on - strand at 863.094 kb on - strand at 863.094 kb on - strand at 863.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 860,463 + PGA1_c08300 0.22 -0.5 860,516 + PGA1_c08300 0.32 -1.3 860,572 + PGA1_c08300 0.43 +0.1 860,580 - PGA1_c08300 0.45 -0.3 860,584 + PGA1_c08300 0.46 +0.6 860,597 - PGA1_c08300 0.48 -0.7 860,597 - PGA1_c08300 0.48 -2.4 860,673 + PGA1_c08300 0.63 +0.1 860,681 - PGA1_c08300 0.65 -0.3 860,693 - PGA1_c08300 0.67 +2.6 860,743 - PGA1_c08300 0.77 +0.5 860,764 + PGA1_c08300 0.81 -0.2 860,804 + PGA1_c08300 0.89 -1.1 860,814 + +0.5 860,906 - PGA1_c08310 0.27 -1.3 860,906 - PGA1_c08310 0.27 -1.7 860,906 - PGA1_c08310 0.27 -1.9 860,989 + PGA1_c08310 0.72 -1.2 860,991 + PGA1_c08310 0.73 -1.3 860,992 - PGA1_c08310 0.74 -1.9 861,034 + -0.8 861,037 - -1.7 861,085 + -0.1 861,093 - +1.0 861,223 - -3.0 861,233 + +0.0 861,238 + -0.8 861,241 - -1.3 861,243 + -1.8 861,245 + -0.5 861,253 + -1.8 861,253 - -1.3 861,261 - -1.5 861,326 + -0.2 861,366 + +1.6 861,366 + +0.3 861,366 + +0.3 861,367 + +0.4 861,374 - -0.0 861,377 + -0.9 861,425 + +1.3 861,436 + -0.2 861,438 - -0.4 861,444 - PGA1_c08320 0.11 -1.7 861,453 - PGA1_c08320 0.12 +0.3 861,545 - PGA1_c08320 0.23 -0.8 861,547 + PGA1_c08320 0.23 +1.1 861,555 - PGA1_c08320 0.24 +0.2 861,582 + PGA1_c08320 0.27 -2.4 861,735 + PGA1_c08320 0.46 -2.1 861,735 + PGA1_c08320 0.46 -0.1 861,743 - PGA1_c08320 0.47 -0.7 861,755 + PGA1_c08320 0.48 -0.5 861,800 - PGA1_c08320 0.54 +0.6 861,803 + PGA1_c08320 0.54 +1.2 861,803 + PGA1_c08320 0.54 -0.5 861,805 + PGA1_c08320 0.55 +0.2 861,811 - PGA1_c08320 0.55 -1.5 861,850 - PGA1_c08320 0.60 +0.7 861,868 + PGA1_c08320 0.62 +0.3 861,868 + PGA1_c08320 0.62 +2.4 861,921 - PGA1_c08320 0.69 -0.8 862,055 + PGA1_c08320 0.85 +0.4 862,063 - PGA1_c08320 0.86 +0.6 862,097 + -1.0 862,097 + +1.2 862,118 + +0.7 862,128 + -0.7 862,152 + +0.4 862,152 + -0.4 862,215 - -0.1 862,215 - -0.8 862,238 + -0.8 862,238 + +0.9 862,239 + -1.0 862,247 - +1.3 862,262 + -0.5 862,287 - +2.1 862,305 + +1.4 862,305 + -1.9 862,305 + +0.8 862,305 + -0.4 862,313 - -0.7 862,313 - -0.9 862,313 - +0.5 862,313 - +0.1 862,313 - -0.9 862,313 - +1.3 862,313 - -0.7 862,313 - +0.0 862,313 - -0.1 862,313 - -0.9 862,313 - +0.7 862,313 - +0.2 862,313 - -1.0 862,313 - -0.2 862,313 - -0.3 862,313 - +0.7 862,313 - +1.1 862,313 - +0.1 862,313 - +1.0 862,313 - +0.4 862,313 - +0.8 862,313 - +0.0 862,313 - +0.7 862,313 - +0.7 862,336 - -0.2 862,380 - PGA1_c08330 0.12 +1.4 862,432 + PGA1_c08330 0.18 -1.3 862,440 - PGA1_c08330 0.18 +1.7 862,452 - PGA1_c08330 0.20 +1.2 862,555 + PGA1_c08330 0.31 +0.3 862,560 + PGA1_c08330 0.32 -0.4 862,569 + PGA1_c08330 0.33 -0.8 862,608 + PGA1_c08330 0.37 -0.8 862,613 + PGA1_c08330 0.37 -1.3 862,613 + PGA1_c08330 0.37 +0.0 862,621 - PGA1_c08330 0.38 -0.3 862,621 - PGA1_c08330 0.38 -0.1 862,621 - PGA1_c08330 0.38 -0.4 862,621 - PGA1_c08330 0.38 +2.6 862,622 - PGA1_c08330 0.38 -1.3 862,657 + PGA1_c08330 0.42 -0.2 862,729 + PGA1_c08330 0.50 +0.3 862,740 + PGA1_c08330 0.51 +0.8 862,781 + PGA1_c08330 0.56 -0.2 862,813 + PGA1_c08330 0.59 +0.3 862,856 + PGA1_c08330 0.64 +1.2 862,864 - PGA1_c08330 0.65 +1.5 862,902 + PGA1_c08330 0.69 +0.3 862,917 - PGA1_c08330 0.71 +0.2 862,932 + PGA1_c08330 0.72 +0.7 863,081 + PGA1_c08330 0.89 -1.1 863,081 + PGA1_c08330 0.89 -0.1 863,086 + PGA1_c08330 0.89 +0.6 863,094 - +0.2 863,094 - -0.9 863,094 - -0.3 863,127 - +1.1
Or see this region's nucleotide sequence