Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06640 and PGA1_c06650 are separated by 178 nucleotides PGA1_c06650 and PGA1_c06660 are separated by 19 nucleotides PGA1_c06660 and PGA1_c06670 are separated by 136 nucleotides
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420
_c06650
PGA1_c06660: PGA1_c06660 - glycosyl transferase-like protein, at 682,440 to 684,380
_c06660
PGA1_c06670: PGA1_c06670 - carbamoyl-phosphate synthase small chain, at 684,517 to 685,680
_c06670
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.445 kb on + strand, within PGA1_c06640 at 681.453 kb on - strand, within PGA1_c06640 at 681.522 kb on + strand, within PGA1_c06640 at 681.584 kb on + strand at 681.598 kb on - strand at 681.611 kb on - strand at 681.611 kb on - strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.669 kb on + strand at 681.691 kb on - strand at 681.691 kb on - strand at 681.699 kb on - strand at 681.710 kb on - strand at 681.730 kb on + strand at 681.736 kb on - strand at 681.760 kb on - strand at 681.813 kb on + strand at 681.922 kb on - strand, within PGA1_c06650 at 682.032 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.146 kb on - strand, within PGA1_c06650 at 682.220 kb on - strand, within PGA1_c06650 at 682.292 kb on + strand, within PGA1_c06650 at 682.415 kb on + strand at 682.415 kb on + strand at 682.423 kb on - strand at 682.423 kb on - strand at 682.440 kb on - strand at 682.481 kb on + strand at 682.844 kb on + strand, within PGA1_c06660 at 682.844 kb on + strand, within PGA1_c06660 at 682.847 kb on + strand, within PGA1_c06660 at 682.899 kb on + strand, within PGA1_c06660 at 682.987 kb on - strand, within PGA1_c06660 at 683.024 kb on + strand, within PGA1_c06660 at 683.032 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.197 kb on + strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.260 kb on + strand, within PGA1_c06660 at 683.410 kb on + strand, within PGA1_c06660 at 683.422 kb on - strand, within PGA1_c06660 at 683.473 kb on + strand, within PGA1_c06660 at 683.602 kb on + strand, within PGA1_c06660 at 683.610 kb on - strand, within PGA1_c06660 at 683.629 kb on + strand, within PGA1_c06660 at 683.631 kb on + strand, within PGA1_c06660 at 683.631 kb on + strand, within PGA1_c06660 at 683.639 kb on - strand, within PGA1_c06660 at 683.650 kb on + strand, within PGA1_c06660 at 683.668 kb on - strand, within PGA1_c06660 at 683.727 kb on - strand, within PGA1_c06660 at 683.729 kb on - strand, within PGA1_c06660 at 683.729 kb on - strand, within PGA1_c06660 at 683.738 kb on + strand, within PGA1_c06660 at 683.757 kb on + strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.797 kb on - strand, within PGA1_c06660 at 683.822 kb on + strand, within PGA1_c06660 at 683.846 kb on + strand, within PGA1_c06660 at 683.848 kb on - strand, within PGA1_c06660 at 683.849 kb on - strand, within PGA1_c06660 at 683.849 kb on - strand, within PGA1_c06660 at 683.939 kb on - strand, within PGA1_c06660 at 683.999 kb on + strand, within PGA1_c06660 at 684.007 kb on - strand, within PGA1_c06660 at 684.085 kb on - strand, within PGA1_c06660 at 684.232 kb on + strand at 684.328 kb on + strand at 684.328 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.359 kb on + strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.367 kb on - strand at 684.369 kb on + strand at 684.371 kb on + strand at 684.377 kb on - strand at 684.388 kb on - strand at 684.399 kb on + strand at 684.399 kb on + strand at 684.407 kb on - strand at 684.445 kb on - strand at 684.455 kb on - strand at 684.494 kb on + strand at 684.499 kb on + strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.523 kb on - strand at 684.572 kb on - strand at 684.590 kb on - strand at 684.681 kb on + strand, within PGA1_c06670 at 684.699 kb on + strand, within PGA1_c06670 at 684.700 kb on + strand, within PGA1_c06670 at 684.707 kb on - strand, within PGA1_c06670 at 684.739 kb on + strand, within PGA1_c06670 at 684.739 kb on + strand, within PGA1_c06670 at 684.987 kb on + strand, within PGA1_c06670 at 685.093 kb on - strand, within PGA1_c06670 at 685.124 kb on + strand, within PGA1_c06670 at 685.374 kb on + strand, within PGA1_c06670
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 681,445 + PGA1_c06640 0.78 -2.4 681,453 - PGA1_c06640 0.79 -0.1 681,522 + PGA1_c06640 0.90 -1.8 681,584 + -1.5 681,598 - -0.8 681,611 - -0.0 681,611 - +0.4 681,637 + -0.4 681,637 + -0.6 681,637 + +0.4 681,637 + -0.0 681,637 + -0.3 681,637 + +0.6 681,645 - -0.5 681,645 - +0.5 681,645 - +1.7 681,645 - -0.3 681,645 - +0.6 681,645 - -1.0 681,669 + +0.2 681,691 - +0.0 681,691 - -0.0 681,699 - -0.6 681,710 - +1.1 681,730 + +2.0 681,736 - -1.1 681,760 - -1.2 681,813 + +1.6 681,922 - PGA1_c06650 0.24 +0.9 682,032 + PGA1_c06650 0.41 -1.0 682,138 + PGA1_c06650 0.57 -1.0 682,138 + PGA1_c06650 0.57 -2.5 682,146 - PGA1_c06650 0.58 -0.3 682,220 - PGA1_c06650 0.69 -1.2 682,292 + PGA1_c06650 0.80 -1.1 682,415 + +1.3 682,415 + +0.4 682,423 - -0.0 682,423 - +1.5 682,440 - +0.1 682,481 + -1.5 682,844 + PGA1_c06660 0.21 +1.2 682,844 + PGA1_c06660 0.21 +1.6 682,847 + PGA1_c06660 0.21 +0.2 682,899 + PGA1_c06660 0.24 +0.5 682,987 - PGA1_c06660 0.28 -0.8 683,024 + PGA1_c06660 0.30 -1.7 683,032 - PGA1_c06660 0.30 -2.8 683,086 - PGA1_c06660 0.33 -0.0 683,086 - PGA1_c06660 0.33 +0.5 683,197 + PGA1_c06660 0.39 -0.1 683,199 - PGA1_c06660 0.39 -2.4 683,199 - PGA1_c06660 0.39 +0.5 683,260 + PGA1_c06660 0.42 +0.2 683,410 + PGA1_c06660 0.50 +0.8 683,422 - PGA1_c06660 0.51 -1.2 683,473 + PGA1_c06660 0.53 -0.6 683,602 + PGA1_c06660 0.60 -0.8 683,610 - PGA1_c06660 0.60 -0.9 683,629 + PGA1_c06660 0.61 +1.1 683,631 + PGA1_c06660 0.61 +0.5 683,631 + PGA1_c06660 0.61 -0.7 683,639 - PGA1_c06660 0.62 -0.9 683,650 + PGA1_c06660 0.62 -0.2 683,668 - PGA1_c06660 0.63 -0.5 683,727 - PGA1_c06660 0.66 +0.7 683,729 - PGA1_c06660 0.66 +0.3 683,729 - PGA1_c06660 0.66 -1.2 683,738 + PGA1_c06660 0.67 -0.1 683,757 + PGA1_c06660 0.68 +0.2 683,797 - PGA1_c06660 0.70 -0.7 683,797 - PGA1_c06660 0.70 -0.1 683,797 - PGA1_c06660 0.70 -0.7 683,822 + PGA1_c06660 0.71 +1.2 683,846 + PGA1_c06660 0.72 -0.0 683,848 - PGA1_c06660 0.73 -0.1 683,849 - PGA1_c06660 0.73 +1.7 683,849 - PGA1_c06660 0.73 -0.6 683,939 - PGA1_c06660 0.77 -1.5 683,999 + PGA1_c06660 0.80 -0.1 684,007 - PGA1_c06660 0.81 -1.1 684,085 - PGA1_c06660 0.85 -0.0 684,232 + -0.5 684,328 + -0.8 684,328 + +0.1 684,359 + +0.2 684,359 + -1.1 684,359 + -2.0 684,359 + -0.1 684,359 + -1.5 684,367 - -0.0 684,367 - -0.2 684,367 - +0.4 684,367 - -0.1 684,367 - -0.6 684,367 - -1.2 684,367 - -0.3 684,367 - -0.8 684,367 - +0.6 684,369 + -0.3 684,371 + -0.0 684,377 - +1.3 684,388 - -0.0 684,399 + -0.7 684,399 + +0.7 684,407 - -1.6 684,445 - -0.6 684,455 - -1.3 684,494 + -1.4 684,499 + -2.5 684,507 - -0.6 684,507 - +0.3 684,523 - +1.2 684,572 - -1.6 684,590 - -0.6 684,681 + PGA1_c06670 0.14 -1.3 684,699 + PGA1_c06670 0.16 -1.2 684,700 + PGA1_c06670 0.16 -1.5 684,707 - PGA1_c06670 0.16 -1.9 684,739 + PGA1_c06670 0.19 -0.3 684,739 + PGA1_c06670 0.19 -1.2 684,987 + PGA1_c06670 0.40 -1.2 685,093 - PGA1_c06670 0.49 -0.0 685,124 + PGA1_c06670 0.52 -1.7 685,374 + PGA1_c06670 0.74 -0.8
Or see this region's nucleotide sequence