Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06580

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06570 and PGA1_c06580 are separated by 89 nucleotidesPGA1_c06580 and PGA1_c06590 are separated by 131 nucleotidesPGA1_c06590 and PGA1_c06600 overlap by 4 nucleotides PGA1_c06570: PGA1_c06570 - putative integral membrane protein, at 675,459 to 676,373 _c06570 PGA1_c06580: PGA1_c06580 - ketol-acid reductoisomerase IlvC, at 676,463 to 677,485 _c06580 PGA1_c06590: PGA1_c06590 - putative transcriptional regulator, AsnC family, at 677,617 to 678,072 _c06590 PGA1_c06600: PGA1_c06600 - putative transcriptional regulator, AsnC family, at 678,069 to 678,527 _c06600 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 675.548 kb on + strandat 675.621 kb on + strand, within PGA1_c06570at 675.626 kb on + strand, within PGA1_c06570at 675.629 kb on - strand, within PGA1_c06570at 675.670 kb on - strand, within PGA1_c06570at 675.733 kb on - strand, within PGA1_c06570at 675.775 kb on + strand, within PGA1_c06570at 675.796 kb on + strand, within PGA1_c06570at 675.836 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.855 kb on + strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.988 kb on + strand, within PGA1_c06570at 675.996 kb on - strand, within PGA1_c06570at 676.083 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.091 kb on - strand, within PGA1_c06570at 676.096 kb on - strand, within PGA1_c06570at 676.113 kb on - strand, within PGA1_c06570at 676.157 kb on - strand, within PGA1_c06570at 676.179 kb on - strand, within PGA1_c06570at 676.207 kb on - strand, within PGA1_c06570at 676.227 kb on - strand, within PGA1_c06570at 676.276 kb on + strand, within PGA1_c06570at 676.317 kb on + strandat 676.324 kb on - strandat 676.380 kb on + strandat 676.380 kb on + strandat 676.388 kb on - strandat 676.403 kb on - strandat 676.408 kb on + strandat 676.425 kb on + strandat 676.430 kb on + strandat 676.430 kb on - strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.438 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.469 kb on - strandat 677.696 kb on + strand, within PGA1_c06590at 677.981 kb on - strand, within PGA1_c06590at 677.989 kb on + strand, within PGA1_c06590at 677.989 kb on + strand, within PGA1_c06590at 677.997 kb on - strand, within PGA1_c06590at 678.475 kb on - strand, within PGA1_c06600

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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675,548 + -0.6
675,621 + PGA1_c06570 0.18 -0.0
675,626 + PGA1_c06570 0.18 +0.6
675,629 - PGA1_c06570 0.19 -0.6
675,670 - PGA1_c06570 0.23 +0.3
675,733 - PGA1_c06570 0.30 -0.2
675,775 + PGA1_c06570 0.35 +1.6
675,796 + PGA1_c06570 0.37 +1.0
675,836 + PGA1_c06570 0.41 -1.2
675,850 + PGA1_c06570 0.43 +1.0
675,850 + PGA1_c06570 0.43 +1.3
675,850 + PGA1_c06570 0.43 -0.9
675,850 + PGA1_c06570 0.43 -1.1
675,855 + PGA1_c06570 0.43 -0.3
675,858 - PGA1_c06570 0.44 -0.0
675,858 - PGA1_c06570 0.44 +0.4
675,863 - PGA1_c06570 0.44 -1.3
675,863 - PGA1_c06570 0.44 -2.3
675,988 + PGA1_c06570 0.58 +0.4
675,996 - PGA1_c06570 0.59 +0.2
676,083 + PGA1_c06570 0.68 -1.2
676,088 + PGA1_c06570 0.69 -0.3
676,088 + PGA1_c06570 0.69 -0.7
676,088 + PGA1_c06570 0.69 +0.1
676,088 + PGA1_c06570 0.69 +0.4
676,091 - PGA1_c06570 0.69 +0.6
676,096 - PGA1_c06570 0.70 -0.5
676,113 - PGA1_c06570 0.71 -0.3
676,157 - PGA1_c06570 0.76 +1.2
676,179 - PGA1_c06570 0.79 +0.8
676,207 - PGA1_c06570 0.82 +0.2
676,227 - PGA1_c06570 0.84 -0.8
676,276 + PGA1_c06570 0.89 -0.2
676,317 + -0.3
676,324 - +0.5
676,380 + +1.0
676,380 + +2.0
676,388 - -0.6
676,403 - -0.7
676,408 + -0.8
676,425 + -0.1
676,430 + +0.3
676,430 - +0.9
676,432 + -1.1
676,432 + -0.6
676,432 + +1.0
676,432 + -0.6
676,438 - +0.5
676,440 - -0.3
676,440 - +0.6
676,440 - +0.6
676,440 - +2.3
676,469 - +1.2
677,696 + PGA1_c06590 0.17 -1.7
677,981 - PGA1_c06590 0.80 -1.6
677,989 + PGA1_c06590 0.82 -1.2
677,989 + PGA1_c06590 0.82 -1.3
677,997 - PGA1_c06590 0.83 -2.3
678,475 - PGA1_c06600 0.88 -0.8

Or see this region's nucleotide sequence