Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06380 and PGA1_c06390 are separated by 192 nucleotides PGA1_c06390 and PGA1_c06400 are separated by 100 nucleotides PGA1_c06400 and PGA1_c06410 are separated by 9 nucleotides
PGA1_c06380: PGA1_c06380 - putative methylthioadenosine phosphorylase, at 653,008 to 654,021
_c06380
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
PGA1_c06400: PGA1_c06400 - putative antibiotic acetyltransferase, at 655,955 to 656,596
_c06400
PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211
_c06410
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 653.251 kb on - strand, within PGA1_c06380 at 653.311 kb on - strand, within PGA1_c06380 at 653.337 kb on + strand, within PGA1_c06380 at 653.345 kb on - strand, within PGA1_c06380 at 653.500 kb on + strand, within PGA1_c06380 at 653.617 kb on + strand, within PGA1_c06380 at 653.643 kb on + strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.651 kb on - strand, within PGA1_c06380 at 653.764 kb on + strand, within PGA1_c06380 at 653.767 kb on - strand, within PGA1_c06380 at 653.778 kb on + strand, within PGA1_c06380 at 653.783 kb on + strand, within PGA1_c06380 at 653.894 kb on + strand, within PGA1_c06380 at 653.925 kb on - strand at 653.926 kb on - strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.018 kb on + strand at 654.019 kb on + strand at 654.022 kb on - strand at 654.028 kb on - strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.063 kb on + strand at 654.071 kb on - strand at 654.071 kb on - strand at 654.072 kb on - strand at 654.104 kb on - strand at 654.130 kb on + strand at 654.143 kb on + strand at 654.151 kb on - strand at 654.203 kb on + strand at 654.224 kb on + strand at 654.279 kb on + strand at 654.321 kb on - strand at 654.412 kb on + strand, within PGA1_c06390 at 654.507 kb on + strand, within PGA1_c06390 at 654.516 kb on + strand, within PGA1_c06390 at 654.542 kb on + strand, within PGA1_c06390 at 654.562 kb on + strand, within PGA1_c06390 at 654.620 kb on + strand, within PGA1_c06390 at 654.681 kb on + strand, within PGA1_c06390 at 654.689 kb on - strand, within PGA1_c06390 at 654.776 kb on - strand, within PGA1_c06390 at 654.787 kb on - strand, within PGA1_c06390 at 654.931 kb on + strand, within PGA1_c06390 at 654.939 kb on - strand, within PGA1_c06390 at 655.026 kb on + strand, within PGA1_c06390 at 655.078 kb on + strand, within PGA1_c06390 at 655.214 kb on - strand, within PGA1_c06390 at 655.238 kb on - strand, within PGA1_c06390 at 655.297 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.340 kb on + strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.348 kb on - strand, within PGA1_c06390 at 655.434 kb on + strand, within PGA1_c06390 at 655.469 kb on - strand, within PGA1_c06390 at 655.495 kb on + strand, within PGA1_c06390 at 655.518 kb on + strand, within PGA1_c06390 at 655.532 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.534 kb on + strand, within PGA1_c06390 at 655.637 kb on + strand, within PGA1_c06390 at 655.648 kb on - strand, within PGA1_c06390 at 655.700 kb on - strand at 655.750 kb on + strand at 655.776 kb on + strand at 655.815 kb on + strand at 655.815 kb on + strand at 655.856 kb on - strand at 655.858 kb on + strand at 655.866 kb on - strand at 655.891 kb on + strand at 655.956 kb on - strand at 656.038 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.343 kb on + strand, within PGA1_c06400 at 656.354 kb on + strand, within PGA1_c06400 at 656.497 kb on - strand, within PGA1_c06400 at 656.529 kb on - strand, within PGA1_c06400 at 656.565 kb on - strand at 656.581 kb on + strand at 656.594 kb on - strand at 656.644 kb on + strand at 656.695 kb on + strand, within PGA1_c06410 at 656.761 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.790 kb on - strand, within PGA1_c06410
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 653,251 - PGA1_c06380 0.24 +0.3 653,311 - PGA1_c06380 0.30 +0.0 653,337 + PGA1_c06380 0.32 +0.9 653,345 - PGA1_c06380 0.33 -0.3 653,500 + PGA1_c06380 0.49 -0.3 653,617 + PGA1_c06380 0.60 -0.2 653,643 + PGA1_c06380 0.63 -0.1 653,651 - PGA1_c06380 0.63 +0.7 653,651 - PGA1_c06380 0.63 +2.0 653,764 + PGA1_c06380 0.75 -0.2 653,767 - PGA1_c06380 0.75 +0.0 653,778 + PGA1_c06380 0.76 +0.4 653,783 + PGA1_c06380 0.76 -0.1 653,894 + PGA1_c06380 0.87 -2.1 653,925 - +0.7 653,926 - +0.5 654,018 + +0.5 654,018 + -0.7 654,018 + +1.3 654,019 + +2.3 654,022 - -0.0 654,028 - -0.2 654,063 + -0.2 654,063 + -0.7 654,063 + -0.9 654,071 - -0.0 654,071 - +0.3 654,072 - -0.3 654,104 - -0.5 654,130 + +0.7 654,143 + +0.0 654,151 - -1.7 654,203 + -1.0 654,224 + +1.2 654,279 + +1.1 654,321 - +1.2 654,412 + PGA1_c06390 0.12 +1.0 654,507 + PGA1_c06390 0.18 +2.4 654,516 + PGA1_c06390 0.18 -0.1 654,542 + PGA1_c06390 0.20 +1.3 654,562 + PGA1_c06390 0.21 +1.2 654,620 + PGA1_c06390 0.25 -0.5 654,681 + PGA1_c06390 0.28 -0.3 654,689 - PGA1_c06390 0.29 -0.5 654,776 - PGA1_c06390 0.34 +2.8 654,787 - PGA1_c06390 0.35 -1.6 654,931 + PGA1_c06390 0.44 +0.4 654,939 - PGA1_c06390 0.44 -0.5 655,026 + PGA1_c06390 0.49 +0.1 655,078 + PGA1_c06390 0.53 -1.0 655,214 - PGA1_c06390 0.61 +1.7 655,238 - PGA1_c06390 0.62 +1.8 655,297 + PGA1_c06390 0.66 +0.8 655,340 + PGA1_c06390 0.69 +0.1 655,340 + PGA1_c06390 0.69 +1.0 655,340 + PGA1_c06390 0.69 +1.2 655,348 - PGA1_c06390 0.69 +0.8 655,348 - PGA1_c06390 0.69 +2.3 655,348 - PGA1_c06390 0.69 +1.8 655,434 + PGA1_c06390 0.74 +0.2 655,469 - PGA1_c06390 0.76 -0.7 655,495 + PGA1_c06390 0.78 +0.9 655,518 + PGA1_c06390 0.79 +0.8 655,532 + PGA1_c06390 0.80 +1.4 655,534 + PGA1_c06390 0.80 +1.3 655,534 + PGA1_c06390 0.80 -1.1 655,637 + PGA1_c06390 0.87 -1.6 655,648 - PGA1_c06390 0.87 +0.3 655,700 - +0.2 655,750 + +0.2 655,776 + +0.7 655,815 + -1.5 655,815 + -0.6 655,856 - +0.7 655,858 + +0.9 655,866 - +0.3 655,891 + -0.6 655,956 - -0.2 656,038 + PGA1_c06400 0.13 -1.6 656,103 + PGA1_c06400 0.23 +0.1 656,103 + PGA1_c06400 0.23 -0.0 656,343 + PGA1_c06400 0.60 -1.3 656,354 + PGA1_c06400 0.62 +0.9 656,497 - PGA1_c06400 0.84 +1.2 656,529 - PGA1_c06400 0.89 -0.2 656,565 - +0.3 656,581 + +1.2 656,594 - +0.7 656,644 + +0.6 656,695 + PGA1_c06410 0.15 +0.8 656,761 + PGA1_c06410 0.26 -0.2 656,772 + PGA1_c06410 0.27 -0.2 656,772 + PGA1_c06410 0.27 +0.2 656,790 - PGA1_c06410 0.30 -2.3
Or see this region's nucleotide sequence