Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04890 and PGA1_c04900 are separated by 77 nucleotides PGA1_c04900 and PGA1_c04910 are separated by 197 nucleotides PGA1_c04910 and PGA1_c04920 are separated by 124 nucleotides
PGA1_c04890: PGA1_c04890 - putative beta-lactamase, at 480,316 to 481,479
_c04890
PGA1_c04900: PGA1_c04900 - peptidyl-tRNA hydrolase Pth, at 481,557 to 482,315
_c04900
PGA1_c04910: PGA1_c04910 - 50S ribosomal protein L25, at 482,513 to 483,142
_c04910
PGA1_c04920: PGA1_c04920 - l-lactate dehydrogenase IldD, at 483,267 to 484,433
_c04920
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.558 kb on - strand, within PGA1_c04890 at 480.583 kb on - strand, within PGA1_c04890 at 480.593 kb on + strand, within PGA1_c04890 at 480.661 kb on + strand, within PGA1_c04890 at 480.666 kb on + strand, within PGA1_c04890 at 480.678 kb on + strand, within PGA1_c04890 at 480.681 kb on - strand, within PGA1_c04890 at 480.692 kb on + strand, within PGA1_c04890 at 480.696 kb on + strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.803 kb on - strand, within PGA1_c04890 at 480.891 kb on + strand, within PGA1_c04890 at 480.898 kb on + strand, within PGA1_c04890 at 480.899 kb on - strand, within PGA1_c04890 at 480.906 kb on - strand, within PGA1_c04890 at 480.934 kb on + strand, within PGA1_c04890 at 480.970 kb on + strand, within PGA1_c04890 at 480.978 kb on - strand, within PGA1_c04890 at 480.978 kb on - strand, within PGA1_c04890 at 481.007 kb on + strand, within PGA1_c04890 at 481.079 kb on + strand, within PGA1_c04890 at 481.142 kb on + strand, within PGA1_c04890 at 481.199 kb on - strand, within PGA1_c04890 at 481.249 kb on + strand, within PGA1_c04890 at 481.249 kb on + strand, within PGA1_c04890 at 481.259 kb on + strand, within PGA1_c04890 at 481.274 kb on - strand, within PGA1_c04890 at 481.274 kb on - strand, within PGA1_c04890 at 481.284 kb on - strand, within PGA1_c04890 at 481.284 kb on - strand, within PGA1_c04890 at 481.363 kb on - strand at 481.376 kb on + strand at 481.404 kb on + strand at 481.411 kb on + strand at 481.411 kb on + strand at 481.419 kb on - strand at 481.424 kb on + strand at 481.479 kb on + strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.497 kb on - strand at 481.498 kb on + strand at 481.506 kb on - strand at 481.506 kb on - strand at 481.508 kb on - strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.588 kb on - strand at 481.611 kb on + strand at 481.614 kb on + strand at 481.614 kb on + strand at 481.619 kb on - strand at 481.619 kb on - strand at 481.622 kb on - strand at 481.629 kb on - strand at 481.629 kb on - strand at 481.666 kb on - strand, within PGA1_c04900 at 481.711 kb on - strand, within PGA1_c04900 at 481.750 kb on + strand, within PGA1_c04900 at 481.763 kb on + strand, within PGA1_c04900 at 482.327 kb on - strand at 482.327 kb on - strand at 482.327 kb on - strand at 482.329 kb on - strand at 482.341 kb on - strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on - strand at 482.358 kb on - strand at 482.366 kb on - strand at 482.366 kb on - strand at 482.399 kb on + strand at 482.419 kb on - strand at 482.421 kb on + strand at 482.435 kb on + strand at 482.435 kb on + strand at 482.443 kb on - strand at 483.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 480,558 - PGA1_c04890 0.21 -1.7 480,583 - PGA1_c04890 0.23 +0.5 480,593 + PGA1_c04890 0.24 -0.3 480,661 + PGA1_c04890 0.30 -1.3 480,666 + PGA1_c04890 0.30 +0.5 480,678 + PGA1_c04890 0.31 -0.4 480,681 - PGA1_c04890 0.31 +1.1 480,692 + PGA1_c04890 0.32 -0.8 480,696 + PGA1_c04890 0.33 +0.7 480,803 - PGA1_c04890 0.42 -0.2 480,803 - PGA1_c04890 0.42 -2.1 480,803 - PGA1_c04890 0.42 -0.9 480,803 - PGA1_c04890 0.42 +1.4 480,803 - PGA1_c04890 0.42 -0.4 480,803 - PGA1_c04890 0.42 +0.1 480,803 - PGA1_c04890 0.42 +0.7 480,803 - PGA1_c04890 0.42 +0.4 480,891 + PGA1_c04890 0.49 +0.1 480,898 + PGA1_c04890 0.50 +0.7 480,899 - PGA1_c04890 0.50 -0.6 480,906 - PGA1_c04890 0.51 +0.6 480,934 + PGA1_c04890 0.53 +0.5 480,970 + PGA1_c04890 0.56 +0.5 480,978 - PGA1_c04890 0.57 -2.1 480,978 - PGA1_c04890 0.57 -2.5 481,007 + PGA1_c04890 0.59 -1.3 481,079 + PGA1_c04890 0.66 -0.2 481,142 + PGA1_c04890 0.71 -0.0 481,199 - PGA1_c04890 0.76 +0.2 481,249 + PGA1_c04890 0.80 -0.9 481,249 + PGA1_c04890 0.80 -0.0 481,259 + PGA1_c04890 0.81 -0.0 481,274 - PGA1_c04890 0.82 -0.7 481,274 - PGA1_c04890 0.82 -0.5 481,284 - PGA1_c04890 0.83 -0.3 481,284 - PGA1_c04890 0.83 +1.8 481,363 - -0.4 481,376 + +0.6 481,404 + -0.1 481,411 + +0.9 481,411 + +1.3 481,419 - -1.4 481,424 + +0.5 481,479 + -0.9 481,497 - +0.9 481,497 - +1.4 481,497 - +0.5 481,497 - -0.0 481,498 + -0.9 481,506 - +1.1 481,506 - -0.5 481,508 - +1.2 481,514 + +0.4 481,514 + -1.4 481,514 + +1.2 481,514 + +0.6 481,514 + -0.0 481,514 + -1.4 481,522 - +1.3 481,522 - +0.8 481,522 - +0.7 481,522 - +0.2 481,522 - +0.7 481,522 - +1.1 481,522 - +1.5 481,522 - +1.6 481,588 - +0.1 481,611 + +1.4 481,614 + +0.1 481,614 + +0.4 481,619 - +0.5 481,619 - -1.8 481,622 - -0.1 481,629 - +1.0 481,629 - +2.1 481,666 - PGA1_c04900 0.14 +1.1 481,711 - PGA1_c04900 0.20 +1.1 481,750 + PGA1_c04900 0.25 +0.3 481,763 + PGA1_c04900 0.27 +1.7 482,327 - -2.0 482,327 - +0.1 482,327 - +1.3 482,329 - +0.8 482,341 - +1.5 482,350 + -0.0 482,350 + +2.4 482,350 + +1.5 482,350 + -0.7 482,358 + -1.5 482,358 + +0.1 482,358 + +1.2 482,358 - +0.3 482,358 - -1.3 482,366 - +0.5 482,366 - +0.2 482,399 + -1.5 482,419 - -0.9 482,421 + -0.2 482,435 + +0.1 482,435 + -1.1 482,443 - +1.4 483,252 - -1.7
Or see this region's nucleotide sequence