Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04090

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04080 and PGA1_c04090 are separated by 23 nucleotidesPGA1_c04090 and PGA1_c04100 are separated by 350 nucleotides PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557 _c04080 PGA1_c04090: PGA1_c04090 - beta-ketoadipyl-CoA thiolase PaaJ, at 393,581 to 394,783 _c04090 PGA1_c04100: PGA1_c04100 - sulfatase, at 395,134 to 396,780 _c04100 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 392.656 kb on + strandat 392.663 kb on - strandat 392.664 kb on - strandat 392.675 kb on + strandat 392.677 kb on + strandat 392.685 kb on - strand, within PGA1_c04080at 392.701 kb on + strand, within PGA1_c04080at 392.715 kb on - strand, within PGA1_c04080at 392.804 kb on + strand, within PGA1_c04080at 392.810 kb on + strand, within PGA1_c04080at 392.852 kb on - strand, within PGA1_c04080at 392.874 kb on - strand, within PGA1_c04080at 392.902 kb on + strand, within PGA1_c04080at 392.924 kb on - strand, within PGA1_c04080at 393.008 kb on - strand, within PGA1_c04080at 393.025 kb on + strand, within PGA1_c04080at 393.096 kb on - strand, within PGA1_c04080at 393.136 kb on + strand, within PGA1_c04080at 393.169 kb on + strand, within PGA1_c04080at 393.262 kb on - strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.279 kb on - strand, within PGA1_c04080at 393.281 kb on + strand, within PGA1_c04080at 393.282 kb on + strand, within PGA1_c04080at 393.289 kb on - strand, within PGA1_c04080at 393.298 kb on + strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.366 kb on + strand, within PGA1_c04080at 393.375 kb on - strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.468 kb on + strandat 393.476 kb on - strandat 393.509 kb on + strandat 393.519 kb on + strandat 393.527 kb on - strandat 393.569 kb on + strandat 393.577 kb on - strandat 393.588 kb on + strandat 393.596 kb on + strandat 393.719 kb on + strand, within PGA1_c04090at 393.724 kb on + strand, within PGA1_c04090at 393.759 kb on - strand, within PGA1_c04090at 393.856 kb on - strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.871 kb on - strand, within PGA1_c04090at 393.871 kb on - strand, within PGA1_c04090at 393.913 kb on + strand, within PGA1_c04090at 393.921 kb on - strand, within PGA1_c04090at 393.956 kb on + strand, within PGA1_c04090at 394.011 kb on - strand, within PGA1_c04090at 394.076 kb on - strand, within PGA1_c04090at 394.133 kb on - strand, within PGA1_c04090at 394.143 kb on + strand, within PGA1_c04090at 394.143 kb on + strand, within PGA1_c04090at 394.151 kb on - strand, within PGA1_c04090at 394.153 kb on + strand, within PGA1_c04090at 394.193 kb on + strand, within PGA1_c04090at 394.230 kb on - strand, within PGA1_c04090at 394.262 kb on + strand, within PGA1_c04090at 394.280 kb on + strand, within PGA1_c04090at 394.280 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.369 kb on - strand, within PGA1_c04090at 394.382 kb on + strand, within PGA1_c04090at 394.396 kb on - strand, within PGA1_c04090at 394.417 kb on - strand, within PGA1_c04090at 394.424 kb on + strand, within PGA1_c04090at 394.465 kb on + strand, within PGA1_c04090at 394.548 kb on + strand, within PGA1_c04090at 394.636 kb on + strand, within PGA1_c04090at 394.650 kb on - strand, within PGA1_c04090at 394.650 kb on - strand, within PGA1_c04090at 394.702 kb on + strandat 394.702 kb on + strandat 394.710 kb on + strandat 394.718 kb on - strandat 394.850 kb on - strandat 394.868 kb on + strandat 394.906 kb on + strandat 394.944 kb on + strandat 394.944 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.949 kb on + strandat 394.957 kb on - strandat 394.957 kb on - strandat 394.957 kb on - strandat 395.043 kb on + strandat 395.049 kb on + strandat 395.049 kb on + strandat 395.049 kb on + strandat 395.051 kb on - strandat 395.055 kb on - strandat 395.057 kb on - strandat 395.062 kb on + strandat 395.062 kb on + strandat 395.062 kb on + strandat 395.062 kb on + strandat 395.062 kb on + strandat 395.062 kb on - strandat 395.070 kb on - strandat 395.070 kb on - strandat 395.070 kb on - strandat 395.096 kb on + strandat 395.148 kb on + strandat 395.176 kb on + strandat 395.183 kb on + strandat 395.184 kb on - strandat 395.200 kb on + strandat 395.202 kb on + strandat 395.208 kb on - strandat 395.225 kb on + strandat 395.258 kb on + strandat 395.266 kb on - strandat 395.266 kb on - strandat 395.276 kb on + strandat 395.285 kb on - strandat 395.298 kb on + strandat 395.316 kb on - strand, within PGA1_c04100at 395.318 kb on + strand, within PGA1_c04100at 395.345 kb on - strand, within PGA1_c04100at 395.348 kb on + strand, within PGA1_c04100at 395.363 kb on - strand, within PGA1_c04100at 395.365 kb on - strand, within PGA1_c04100at 395.378 kb on - strand, within PGA1_c04100at 395.378 kb on - strand, within PGA1_c04100at 395.388 kb on + strand, within PGA1_c04100at 395.391 kb on - strand, within PGA1_c04100at 395.395 kb on + strand, within PGA1_c04100at 395.395 kb on + strand, within PGA1_c04100at 395.427 kb on - strand, within PGA1_c04100at 395.434 kb on - strand, within PGA1_c04100at 395.449 kb on + strand, within PGA1_c04100at 395.457 kb on - strand, within PGA1_c04100at 395.467 kb on - strand, within PGA1_c04100at 395.467 kb on - strand, within PGA1_c04100at 395.470 kb on + strand, within PGA1_c04100at 395.538 kb on + strand, within PGA1_c04100at 395.546 kb on - strand, within PGA1_c04100at 395.561 kb on - strand, within PGA1_c04100at 395.561 kb on - strand, within PGA1_c04100at 395.577 kb on + strand, within PGA1_c04100at 395.577 kb on + strand, within PGA1_c04100at 395.585 kb on - strand, within PGA1_c04100at 395.605 kb on + strand, within PGA1_c04100at 395.610 kb on + strand, within PGA1_c04100at 395.615 kb on + strand, within PGA1_c04100at 395.628 kb on + strand, within PGA1_c04100at 395.628 kb on + strand, within PGA1_c04100at 395.628 kb on + strand, within PGA1_c04100at 395.636 kb on - strand, within PGA1_c04100at 395.636 kb on - strand, within PGA1_c04100at 395.691 kb on + strand, within PGA1_c04100at 395.708 kb on - strand, within PGA1_c04100at 395.722 kb on + strand, within PGA1_c04100at 395.740 kb on - strand, within PGA1_c04100

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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392,656 + -0.1
392,663 - +1.5
392,664 - +1.1
392,675 + +0.3
392,677 + +2.0
392,685 - PGA1_c04080 0.11 +1.9
392,701 + PGA1_c04080 0.12 -1.8
392,715 - PGA1_c04080 0.14 +0.5
392,804 + PGA1_c04080 0.23 +1.2
392,810 + PGA1_c04080 0.24 +1.8
392,852 - PGA1_c04080 0.28 +1.3
392,874 - PGA1_c04080 0.30 +2.5
392,902 + PGA1_c04080 0.33 +2.0
392,924 - PGA1_c04080 0.35 -0.8
393,008 - PGA1_c04080 0.44 +0.4
393,025 + PGA1_c04080 0.46 +1.2
393,096 - PGA1_c04080 0.53 +0.6
393,136 + PGA1_c04080 0.57 +0.3
393,169 + PGA1_c04080 0.60 -1.4
393,262 - PGA1_c04080 0.70 +0.4
393,271 + PGA1_c04080 0.71 +0.9
393,271 + PGA1_c04080 0.71 +0.5
393,271 + PGA1_c04080 0.71 +0.7
393,271 + PGA1_c04080 0.71 +0.8
393,279 - PGA1_c04080 0.71 +1.4
393,281 + PGA1_c04080 0.72 +0.7
393,282 + PGA1_c04080 0.72 +1.7
393,289 - PGA1_c04080 0.72 +1.2
393,298 + PGA1_c04080 0.73 +0.0
393,306 - PGA1_c04080 0.74 +0.9
393,306 - PGA1_c04080 0.74 -0.2
393,366 + PGA1_c04080 0.80 +0.5
393,375 - PGA1_c04080 0.81 +0.6
393,420 + PGA1_c04080 0.86 +1.3
393,420 + PGA1_c04080 0.86 +1.8
393,468 + +2.9
393,476 - +0.9
393,509 + +0.9
393,519 + +0.8
393,527 - -0.3
393,569 + +1.6
393,577 - +0.9
393,588 + +1.3
393,596 + +1.3
393,719 + PGA1_c04090 0.11 -0.6
393,724 + PGA1_c04090 0.12 +0.7
393,759 - PGA1_c04090 0.15 +1.0
393,856 - PGA1_c04090 0.23 +1.5
393,863 + PGA1_c04090 0.23 +1.9
393,863 + PGA1_c04090 0.23 +1.2
393,863 + PGA1_c04090 0.23 -0.1
393,871 - PGA1_c04090 0.24 -0.1
393,871 - PGA1_c04090 0.24 +0.7
393,913 + PGA1_c04090 0.28 +1.1
393,921 - PGA1_c04090 0.28 -0.1
393,956 + PGA1_c04090 0.31 -2.0
394,011 - PGA1_c04090 0.36 -0.6
394,076 - PGA1_c04090 0.41 +1.0
394,133 - PGA1_c04090 0.46 -0.3
394,143 + PGA1_c04090 0.47 -0.1
394,143 + PGA1_c04090 0.47 +0.2
394,151 - PGA1_c04090 0.47 +0.2
394,153 + PGA1_c04090 0.48 +1.1
394,193 + PGA1_c04090 0.51 +1.5
394,230 - PGA1_c04090 0.54 +1.6
394,262 + PGA1_c04090 0.57 +2.4
394,280 + PGA1_c04090 0.58 -0.5
394,280 + PGA1_c04090 0.58 +0.5
394,361 + PGA1_c04090 0.65 +0.6
394,361 + PGA1_c04090 0.65 -0.7
394,361 + PGA1_c04090 0.65 +1.7
394,369 - PGA1_c04090 0.66 -0.4
394,382 + PGA1_c04090 0.67 +1.4
394,396 - PGA1_c04090 0.68 -0.9
394,417 - PGA1_c04090 0.69 +0.2
394,424 + PGA1_c04090 0.70 +0.6
394,465 + PGA1_c04090 0.73 +1.4
394,548 + PGA1_c04090 0.80 +1.0
394,636 + PGA1_c04090 0.88 +1.3
394,650 - PGA1_c04090 0.89 +1.8
394,650 - PGA1_c04090 0.89 +1.2
394,702 + +2.1
394,702 + +1.0
394,710 + +1.0
394,718 - +0.1
394,850 - +1.4
394,868 + +1.3
394,906 + -0.7
394,944 + -0.2
394,944 + +1.0
394,949 + +0.4
394,949 + -0.2
394,949 + -1.1
394,949 + -2.2
394,949 + -0.4
394,949 + +0.5
394,949 + -0.1
394,957 - -0.8
394,957 - -0.5
394,957 - -0.6
395,043 + +0.2
395,049 + -1.1
395,049 + +0.0
395,049 + -1.4
395,051 - -0.0
395,055 - -1.1
395,057 - +0.2
395,062 + +0.6
395,062 + -0.3
395,062 + -2.4
395,062 + +0.5
395,062 + +0.5
395,062 - -0.4
395,070 - +0.5
395,070 - +0.2
395,070 - -1.8
395,096 + -0.2
395,148 + -0.2
395,176 + +0.7
395,183 + +0.2
395,184 - +0.7
395,200 + -0.9
395,202 + -1.5
395,208 - +0.9
395,225 + +0.4
395,258 + +0.6
395,266 - -0.4
395,266 - +1.2
395,276 + -1.2
395,285 - +1.4
395,298 + -1.2
395,316 - PGA1_c04100 0.11 -2.1
395,318 + PGA1_c04100 0.11 +0.2
395,345 - PGA1_c04100 0.13 -1.3
395,348 + PGA1_c04100 0.13 +0.8
395,363 - PGA1_c04100 0.14 +0.7
395,365 - PGA1_c04100 0.14 +0.2
395,378 - PGA1_c04100 0.15 -0.0
395,378 - PGA1_c04100 0.15 -0.7
395,388 + PGA1_c04100 0.15 +0.6
395,391 - PGA1_c04100 0.16 -0.1
395,395 + PGA1_c04100 0.16 -1.7
395,395 + PGA1_c04100 0.16 +0.5
395,427 - PGA1_c04100 0.18 +0.3
395,434 - PGA1_c04100 0.18 +0.0
395,449 + PGA1_c04100 0.19 -1.0
395,457 - PGA1_c04100 0.20 +0.8
395,467 - PGA1_c04100 0.20 +1.4
395,467 - PGA1_c04100 0.20 +0.2
395,470 + PGA1_c04100 0.20 -0.5
395,538 + PGA1_c04100 0.25 -0.2
395,546 - PGA1_c04100 0.25 -0.2
395,561 - PGA1_c04100 0.26 -1.6
395,561 - PGA1_c04100 0.26 +0.5
395,577 + PGA1_c04100 0.27 -2.1
395,577 + PGA1_c04100 0.27 -1.9
395,585 - PGA1_c04100 0.27 +1.1
395,605 + PGA1_c04100 0.29 -2.5
395,610 + PGA1_c04100 0.29 -0.1
395,615 + PGA1_c04100 0.29 -1.2
395,628 + PGA1_c04100 0.30 +1.1
395,628 + PGA1_c04100 0.30 -0.3
395,628 + PGA1_c04100 0.30 -0.4
395,636 - PGA1_c04100 0.30 -0.0
395,636 - PGA1_c04100 0.30 -0.6
395,691 + PGA1_c04100 0.34 -1.9
395,708 - PGA1_c04100 0.35 -0.9
395,722 + PGA1_c04100 0.36 -0.3
395,740 - PGA1_c04100 0.37 -1.6

Or see this region's nucleotide sequence