Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01280

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotidesPGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotidesPGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465 _262p01260 PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261 _262p01270 PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872 _262p01280 PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977 _262p01290 Position (kb) 139 140Strain fitness (log2 ratio) -1 0 1at 138.344 kb on + strandat 138.383 kb on - strandat 138.827 kb on - strand, within PGA1_262p01270at 138.827 kb on - strand, within PGA1_262p01270at 138.850 kb on - strand, within PGA1_262p01270at 139.092 kb on - strand, within PGA1_262p01270at 139.151 kb on + strand, within PGA1_262p01270at 139.579 kb on + strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.770 kb on - strand, within PGA1_262p01280at 140.074 kb on - strand, within PGA1_262p01290at 140.079 kb on - strand, within PGA1_262p01290at 140.152 kb on + strand, within PGA1_262p01290at 140.215 kb on - strand, within PGA1_262p01290at 140.215 kb on - strand, within PGA1_262p01290at 140.446 kb on + strand, within PGA1_262p01290at 140.454 kb on - strand, within PGA1_262p01290at 140.533 kb on - strand, within PGA1_262p01290at 140.620 kb on - strand, within PGA1_262p01290at 140.637 kb on + strand, within PGA1_262p01290at 140.647 kb on + strand, within PGA1_262p01290

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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138,344 + +1.5
138,383 - +0.0
138,827 - PGA1_262p01270 0.43 -0.4
138,827 - PGA1_262p01270 0.43 -0.2
138,850 - PGA1_262p01270 0.46 -0.4
139,092 - PGA1_262p01270 0.78 -0.4
139,151 + PGA1_262p01270 0.85 -0.3
139,579 + PGA1_262p01280 0.52 -0.5
139,734 - PGA1_262p01280 0.77 -0.7
139,734 - PGA1_262p01280 0.77 -0.8
139,734 - PGA1_262p01280 0.77 +0.3
139,770 - PGA1_262p01280 0.83 -0.8
140,074 - PGA1_262p01290 0.10 +0.7
140,079 - PGA1_262p01290 0.11 -0.4
140,152 + PGA1_262p01290 0.18 -0.1
140,215 - PGA1_262p01290 0.24 -0.4
140,215 - PGA1_262p01290 0.24 -0.9
140,446 + PGA1_262p01290 0.47 +1.0
140,454 - PGA1_262p01290 0.48 +0.4
140,533 - PGA1_262p01290 0.56 -0.4
140,620 - PGA1_262p01290 0.64 +0.5
140,637 + PGA1_262p01290 0.66 -0.3
140,647 + PGA1_262p01290 0.67 +0.7

Or see this region's nucleotide sequence