Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00920

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00900 and PGA1_262p00910 overlap by 4 nucleotidesPGA1_262p00910 and PGA1_262p00920 are separated by 83 nucleotidesPGA1_262p00920 and PGA1_262p00930 overlap by 4 nucleotidesPGA1_262p00930 and PGA1_262p00940 are separated by 40 nucleotides PGA1_262p00900: PGA1_262p00900 - ABC transporter, ATP-binding protein, at 100,354 to 101,850 _262p00900 PGA1_262p00910: PGA1_262p00910 - putative cation transort protein, at 101,847 to 102,404 _262p00910 PGA1_262p00920: PGA1_262p00920 - Membrane proteins related to metalloendopeptidases, at 102,488 to 103,174 _262p00920 PGA1_262p00930: PGA1_262p00930 - hypothetical protein, at 103,171 to 103,752 _262p00930 PGA1_262p00940: PGA1_262p00940 - acyl-CoA dehydrogenase TdaE, at 103,793 to 104,986 _262p00940 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 101.715 kb on - strandat 101.734 kb on + strandat 101.891 kb on + strandat 101.891 kb on + strandat 101.958 kb on - strand, within PGA1_262p00910at 102.064 kb on + strand, within PGA1_262p00910at 102.323 kb on - strand, within PGA1_262p00910at 102.344 kb on + strand, within PGA1_262p00910at 102.352 kb on - strandat 102.406 kb on + strandat 102.532 kb on - strandat 102.532 kb on - strandat 102.648 kb on + strand, within PGA1_262p00920at 102.726 kb on + strand, within PGA1_262p00920at 102.737 kb on + strand, within PGA1_262p00920at 102.745 kb on - strand, within PGA1_262p00920at 102.870 kb on + strand, within PGA1_262p00920at 102.873 kb on - strand, within PGA1_262p00920at 102.921 kb on + strand, within PGA1_262p00920at 102.990 kb on + strand, within PGA1_262p00920at 103.184 kb on + strandat 103.238 kb on - strand, within PGA1_262p00930at 103.238 kb on - strand, within PGA1_262p00930at 103.290 kb on + strand, within PGA1_262p00930at 103.498 kb on + strand, within PGA1_262p00930at 103.748 kb on - strandat 104.045 kb on + strand, within PGA1_262p00940

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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101,715 - +0.8
101,734 + +1.1
101,891 + +0.2
101,891 + -1.6
101,958 - PGA1_262p00910 0.20 +0.3
102,064 + PGA1_262p00910 0.39 +0.4
102,323 - PGA1_262p00910 0.85 -1.7
102,344 + PGA1_262p00910 0.89 -1.9
102,352 - -0.1
102,406 + -0.5
102,532 - +0.0
102,532 - -0.5
102,648 + PGA1_262p00920 0.23 +0.5
102,726 + PGA1_262p00920 0.35 -0.4
102,737 + PGA1_262p00920 0.36 -1.5
102,745 - PGA1_262p00920 0.37 +0.8
102,870 + PGA1_262p00920 0.56 -1.1
102,873 - PGA1_262p00920 0.56 -1.6
102,921 + PGA1_262p00920 0.63 -0.7
102,990 + PGA1_262p00920 0.73 -1.5
103,184 + -0.4
103,238 - PGA1_262p00930 0.12 -1.7
103,238 - PGA1_262p00930 0.12 +0.3
103,290 + PGA1_262p00930 0.20 +0.7
103,498 + PGA1_262p00930 0.56 +0.3
103,748 - -1.1
104,045 + PGA1_262p00940 0.21 -1.2

Or see this region's nucleotide sequence