Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03400 and PGA1_c03410 are separated by 298 nucleotides PGA1_c03410 and PGA1_c03420 are separated by 121 nucleotides
PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) <small>(from data)</small>, at 326,480 to 327,655
_c03400
PGA1_c03410: PGA1_c03410 - EAL domain-containing protein, at 327,954 to 328,796
_c03410
PGA1_c03420: PGA1_c03420 - putative C-5 sterol desaturase, at 328,918 to 329,847
_c03420
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.026 kb on + strand, within PGA1_c03400 at 327.034 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.147 kb on - strand, within PGA1_c03400 at 327.178 kb on - strand, within PGA1_c03400 at 327.179 kb on + strand, within PGA1_c03400 at 327.268 kb on - strand, within PGA1_c03400 at 327.278 kb on - strand, within PGA1_c03400 at 327.326 kb on + strand, within PGA1_c03400 at 327.329 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.382 kb on + strand, within PGA1_c03400 at 327.390 kb on + strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.400 kb on + strand, within PGA1_c03400 at 327.407 kb on + strand, within PGA1_c03400 at 327.431 kb on - strand, within PGA1_c03400 at 327.438 kb on + strand, within PGA1_c03400 at 327.443 kb on + strand, within PGA1_c03400 at 327.463 kb on + strand, within PGA1_c03400 at 327.483 kb on - strand, within PGA1_c03400 at 327.547 kb on - strand at 327.557 kb on - strand at 327.671 kb on + strand at 327.679 kb on - strand at 327.679 kb on - strand at 327.701 kb on - strand at 327.703 kb on + strand at 327.711 kb on - strand at 327.711 kb on - strand at 327.755 kb on + strand at 327.767 kb on + strand at 327.767 kb on - strand at 327.774 kb on + strand at 327.791 kb on + strand at 327.796 kb on + strand at 327.799 kb on - strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.844 kb on - strand at 327.848 kb on + strand at 327.854 kb on - strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.891 kb on + strand at 327.900 kb on - strand at 327.921 kb on - strand at 327.940 kb on + strand at 327.940 kb on - strand at 327.942 kb on + strand at 327.943 kb on - strand at 327.950 kb on - strand at 327.958 kb on - strand at 327.960 kb on - strand at 327.961 kb on + strand at 327.991 kb on - strand at 328.002 kb on + strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.012 kb on + strand at 328.026 kb on + strand at 328.034 kb on - strand at 328.070 kb on + strand, within PGA1_c03410 at 328.316 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.324 kb on - strand, within PGA1_c03410 at 328.347 kb on + strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.441 kb on + strand, within PGA1_c03410 at 328.453 kb on - strand, within PGA1_c03410 at 328.463 kb on + strand, within PGA1_c03410 at 328.502 kb on + strand, within PGA1_c03410 at 328.504 kb on - strand, within PGA1_c03410 at 328.507 kb on + strand, within PGA1_c03410 at 328.517 kb on + strand, within PGA1_c03410 at 328.599 kb on + strand, within PGA1_c03410 at 328.614 kb on - strand, within PGA1_c03410 at 328.616 kb on + strand, within PGA1_c03410 at 328.633 kb on + strand, within PGA1_c03410 at 328.730 kb on + strand at 328.738 kb on - strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.798 kb on + strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.806 kb on - strand at 328.807 kb on - strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.816 kb on + strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.824 kb on - strand at 328.829 kb on - strand at 328.829 kb on - strand at 328.829 kb on - strand at 328.834 kb on - strand at 328.839 kb on - strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.841 kb on + strand at 328.849 kb on - strand at 328.849 kb on - strand at 328.915 kb on + strand at 328.916 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.918 kb on - strand at 328.921 kb on + strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.923 kb on - strand at 328.942 kb on - strand at 328.944 kb on + strand at 328.949 kb on + strand at 328.952 kb on - strand at 328.980 kb on + strand at 328.980 kb on + strand at 328.988 kb on - strand at 329.011 kb on + strand, within PGA1_c03420 at 329.099 kb on - strand, within PGA1_c03420 at 329.115 kb on + strand, within PGA1_c03420 at 329.135 kb on - strand, within PGA1_c03420 at 329.139 kb on + strand, within PGA1_c03420 at 329.143 kb on - strand, within PGA1_c03420 at 329.154 kb on - strand, within PGA1_c03420 at 329.169 kb on - strand, within PGA1_c03420 at 329.169 kb on - strand, within PGA1_c03420 at 329.203 kb on - strand, within PGA1_c03420 at 329.217 kb on + strand, within PGA1_c03420 at 329.217 kb on + strand, within PGA1_c03420 at 329.269 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.274 kb on + strand, within PGA1_c03420 at 329.284 kb on + strand, within PGA1_c03420 at 329.295 kb on + strand, within PGA1_c03420 at 329.295 kb on + strand, within PGA1_c03420 at 329.303 kb on - strand, within PGA1_c03420 at 329.305 kb on + strand, within PGA1_c03420 at 329.324 kb on + strand, within PGA1_c03420 at 329.344 kb on - strand, within PGA1_c03420 at 329.358 kb on - strand, within PGA1_c03420 at 329.388 kb on + strand, within PGA1_c03420 at 329.404 kb on + strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.441 kb on - strand, within PGA1_c03420 at 329.447 kb on + strand, within PGA1_c03420 at 329.514 kb on + strand, within PGA1_c03420 at 329.520 kb on - strand, within PGA1_c03420 at 329.522 kb on + strand, within PGA1_c03420 at 329.547 kb on + strand, within PGA1_c03420 at 329.552 kb on + strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.606 kb on + strand, within PGA1_c03420 at 329.629 kb on - strand, within PGA1_c03420 at 329.682 kb on + strand, within PGA1_c03420 at 329.714 kb on - strand, within PGA1_c03420 at 329.721 kb on - strand, within PGA1_c03420
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 327,026 + PGA1_c03400 0.46 -0.9 327,034 - PGA1_c03400 0.47 -0.4 327,058 - PGA1_c03400 0.49 +0.2 327,058 - PGA1_c03400 0.49 +1.2 327,102 + PGA1_c03400 0.53 +0.6 327,102 + PGA1_c03400 0.53 +0.7 327,147 - PGA1_c03400 0.57 -0.9 327,178 - PGA1_c03400 0.59 -0.5 327,179 + PGA1_c03400 0.59 +0.0 327,268 - PGA1_c03400 0.67 +0.2 327,278 - PGA1_c03400 0.68 +0.7 327,326 + PGA1_c03400 0.72 -0.3 327,329 - PGA1_c03400 0.72 -0.6 327,334 - PGA1_c03400 0.73 +0.5 327,334 - PGA1_c03400 0.73 +0.7 327,334 - PGA1_c03400 0.73 +0.9 327,382 + PGA1_c03400 0.77 +0.1 327,390 + PGA1_c03400 0.77 +0.2 327,390 - PGA1_c03400 0.77 +0.3 327,390 - PGA1_c03400 0.77 -0.2 327,400 + PGA1_c03400 0.78 +0.6 327,407 + PGA1_c03400 0.79 +1.0 327,431 - PGA1_c03400 0.81 -1.4 327,438 + PGA1_c03400 0.81 +0.9 327,443 + PGA1_c03400 0.82 +0.5 327,463 + PGA1_c03400 0.84 +1.5 327,483 - PGA1_c03400 0.85 +0.9 327,547 - -1.4 327,557 - -0.4 327,671 + +1.3 327,679 - +0.7 327,679 - +0.6 327,701 - +0.1 327,703 + +0.0 327,711 - -0.1 327,711 - +0.7 327,755 + +0.4 327,767 + -0.5 327,767 - +0.4 327,774 + +0.9 327,791 + +0.3 327,796 + -0.3 327,799 - +0.2 327,801 + +0.8 327,801 + +1.0 327,801 + -0.4 327,801 + +0.4 327,801 + +0.4 327,801 + +0.8 327,801 + -1.4 327,801 + -0.1 327,801 + +0.1 327,809 - -1.1 327,809 - -1.4 327,809 - -0.3 327,809 - +1.4 327,844 - -2.1 327,848 + -0.1 327,854 - -1.2 327,881 + -0.7 327,881 + +0.4 327,881 + +0.7 327,881 + +0.6 327,881 + +0.7 327,881 + -1.4 327,881 + -0.5 327,881 + +0.1 327,889 - -0.2 327,889 - -1.1 327,889 - +0.2 327,889 - +0.9 327,889 - +0.2 327,889 - -1.1 327,889 - -0.4 327,889 - -0.2 327,889 - +0.3 327,889 - -0.3 327,889 - -0.7 327,889 - -0.1 327,889 - -1.7 327,889 - +1.4 327,889 - -0.1 327,889 - +1.9 327,889 - -0.9 327,891 + -0.6 327,900 - +0.5 327,921 - +1.5 327,940 + +0.4 327,940 - +0.7 327,942 + -0.6 327,943 - -0.2 327,950 - -1.5 327,958 - +0.3 327,960 - -0.4 327,961 + +0.3 327,991 - -0.2 328,002 + -1.2 328,010 - -1.2 328,010 - +0.2 328,010 - -0.1 328,010 - -1.2 328,012 + -0.1 328,026 + +1.8 328,034 - -2.7 328,070 + PGA1_c03410 0.14 -1.9 328,316 + PGA1_c03410 0.43 -1.0 328,321 + PGA1_c03410 0.44 -0.6 328,321 + PGA1_c03410 0.44 -1.5 328,324 - PGA1_c03410 0.44 +0.2 328,347 + PGA1_c03410 0.47 -0.2 328,350 - PGA1_c03410 0.47 -0.5 328,350 - PGA1_c03410 0.47 -0.9 328,441 + PGA1_c03410 0.58 -0.4 328,453 - PGA1_c03410 0.59 -1.4 328,463 + PGA1_c03410 0.60 -0.9 328,502 + PGA1_c03410 0.65 -2.4 328,504 - PGA1_c03410 0.65 -0.2 328,507 + PGA1_c03410 0.66 -0.5 328,517 + PGA1_c03410 0.67 +0.2 328,599 + PGA1_c03410 0.77 -1.0 328,614 - PGA1_c03410 0.78 -1.4 328,616 + PGA1_c03410 0.79 -0.7 328,633 + PGA1_c03410 0.81 -0.3 328,730 + -0.9 328,738 - -1.3 328,798 + -0.7 328,798 + -0.4 328,798 + -1.8 328,798 + -0.4 328,798 + +0.1 328,798 + -2.4 328,806 - -1.0 328,806 - +0.7 328,806 - -0.2 328,806 - -0.9 328,806 - +0.5 328,807 - -2.8 328,816 + +0.2 328,816 + -2.4 328,816 + +0.2 328,816 + -0.4 328,816 + -1.6 328,824 - -1.1 328,824 - +0.1 328,824 - +0.0 328,824 - -1.1 328,824 - -0.9 328,824 - +1.0 328,824 - +0.3 328,824 - +0.9 328,829 - +0.6 328,829 - -2.3 328,829 - -1.3 328,834 - -0.3 328,839 - +2.1 328,841 + -0.5 328,841 + -0.2 328,841 + -0.2 328,841 + -1.9 328,849 - -2.6 328,849 - -0.2 328,915 + +0.0 328,916 - +0.1 328,918 - +1.1 328,918 - +0.7 328,918 - +1.1 328,918 - -0.2 328,921 + -1.7 328,923 - -0.7 328,923 - -0.3 328,923 - -0.4 328,923 - -0.5 328,923 - +0.4 328,942 - +1.1 328,944 + -1.5 328,949 + -2.5 328,952 - +0.9 328,980 + -1.1 328,980 + +0.1 328,988 - +0.6 329,011 + PGA1_c03420 0.10 +1.3 329,099 - PGA1_c03420 0.19 +0.8 329,115 + PGA1_c03420 0.21 -1.0 329,135 - PGA1_c03420 0.23 -0.1 329,139 + PGA1_c03420 0.24 -0.0 329,143 - PGA1_c03420 0.24 -0.9 329,154 - PGA1_c03420 0.25 -2.6 329,169 - PGA1_c03420 0.27 +0.5 329,169 - PGA1_c03420 0.27 -0.0 329,203 - PGA1_c03420 0.31 -1.7 329,217 + PGA1_c03420 0.32 -1.7 329,217 + PGA1_c03420 0.32 +0.9 329,269 + PGA1_c03420 0.38 -0.3 329,274 + PGA1_c03420 0.38 +0.2 329,274 + PGA1_c03420 0.38 +1.2 329,274 + PGA1_c03420 0.38 +1.6 329,284 + PGA1_c03420 0.39 +0.9 329,295 + PGA1_c03420 0.41 +1.0 329,295 + PGA1_c03420 0.41 -0.7 329,303 - PGA1_c03420 0.41 +1.1 329,305 + PGA1_c03420 0.42 +0.2 329,324 + PGA1_c03420 0.44 -0.3 329,344 - PGA1_c03420 0.46 -2.1 329,358 - PGA1_c03420 0.47 -1.7 329,388 + PGA1_c03420 0.51 -1.2 329,404 + PGA1_c03420 0.52 +0.6 329,412 - PGA1_c03420 0.53 -0.6 329,412 - PGA1_c03420 0.53 +0.6 329,441 - PGA1_c03420 0.56 +1.3 329,447 + PGA1_c03420 0.57 +0.7 329,514 + PGA1_c03420 0.64 +0.7 329,520 - PGA1_c03420 0.65 +0.5 329,522 + PGA1_c03420 0.65 -1.4 329,547 + PGA1_c03420 0.68 +1.0 329,552 + PGA1_c03420 0.68 -0.7 329,558 - PGA1_c03420 0.69 -0.2 329,558 - PGA1_c03420 0.69 -0.8 329,606 + PGA1_c03420 0.74 -1.7 329,629 - PGA1_c03420 0.76 +0.4 329,682 + PGA1_c03420 0.82 +0.5 329,714 - PGA1_c03420 0.86 -1.2 329,721 - PGA1_c03420 0.86 +0.5
Or see this region's nucleotide sequence