Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30490

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
3,183,790	+		PGA1_c30480	0.32	-1.7
3,183,808	+		PGA1_c30480	0.34	+0.6
3,183,808	+		PGA1_c30480	0.34	-0.8
3,183,816	-		PGA1_c30480	0.35	-1.5
3,183,825	+		PGA1_c30480	0.36	-1.3
3,183,911	-		PGA1_c30480	0.44	-2.5
3,183,922	+		PGA1_c30480	0.46	-0.6
3,183,925	+		PGA1_c30480	0.46	-3.0
3,183,934	+		PGA1_c30480	0.47	-2.6
3,183,942	-		PGA1_c30480	0.48	-1.0
3,183,942	-		PGA1_c30480	0.48	+0.0
3,183,943	-		PGA1_c30480	0.48	-1.5
3,183,994	+		PGA1_c30480	0.53	-2.5
3,184,045	-		PGA1_c30480	0.58	-3.3
3,184,087	+		PGA1_c30480	0.62	-1.8
3,184,100	-		PGA1_c30480	0.63	-2.5
3,184,129	+		PGA1_c30480	0.66	-0.6
3,184,129	+		PGA1_c30480	0.66	-2.1
3,184,129	+		PGA1_c30480	0.66	-0.8
3,184,137	-		PGA1_c30480	0.67	-0.9
3,184,137	-		PGA1_c30480	0.67	-1.6
3,184,137	-		PGA1_c30480	0.67	-1.8
3,184,137	-		PGA1_c30480	0.67	-2.7
3,184,137	-		PGA1_c30480	0.67	-3.2
3,184,137	-		PGA1_c30480	0.67	-1.9
3,184,137	-		PGA1_c30480	0.67	-1.7
3,184,137	-		PGA1_c30480	0.67	-0.6
3,184,144	+		PGA1_c30480	0.68	-0.9
3,184,154	+		PGA1_c30480	0.69	-1.0
3,184,177	-		PGA1_c30480	0.71	-1.6
3,184,204	+		PGA1_c30480	0.74	-2.6
3,184,212	-		PGA1_c30480	0.74	-3.5
3,184,241	-		PGA1_c30480	0.77	-2.5
3,184,269	-		PGA1_c30480	0.80	-1.5
3,184,303	-		PGA1_c30480	0.84	-1.0
3,184,303	-		PGA1_c30480	0.84	+2.2
3,184,303	-		PGA1_c30480	0.84	-2.4
3,184,303	-		PGA1_c30480	0.84	-1.7
3,184,309	-		PGA1_c30480	0.84	-0.2
3,184,365	-		PGA1_c30480	0.90	-0.9
3,184,473	+				-2.4
3,184,489	+				-2.4
3,184,505	+				-1.6
3,184,511	+				-0.7
3,184,513	-				-2.3
3,184,513	-				-1.9
3,184,533	+				-0.8
3,184,673	+				+1.4
3,184,834	-				-0.4
3,184,836	+				-1.5
3,184,836	+				-0.9
3,184,846	+				+0.7
3,184,863	+				+0.7
3,184,886	+		PGA1_c30490	0.11	+0.1
3,184,891	+		PGA1_c30490	0.11	+1.8
3,184,896	+		PGA1_c30490	0.12	+0.9
3,184,904	-		PGA1_c30490	0.13	-0.4
3,184,939	+		PGA1_c30490	0.16	+2.0
3,184,939	+		PGA1_c30490	0.16	-1.3
3,184,939	+		PGA1_c30490	0.16	+1.4
3,184,947	-		PGA1_c30490	0.17	+0.7
3,184,949	+		PGA1_c30490	0.17	-0.3
3,184,953	-		PGA1_c30490	0.18	-0.8
3,184,953	-		PGA1_c30490	0.18	+1.5
3,184,957	-		PGA1_c30490	0.18	+1.6
3,184,966	+		PGA1_c30490	0.19	-1.6
3,184,966	+		PGA1_c30490	0.19	+0.2
3,184,968	+		PGA1_c30490	0.19	-0.8
3,184,968	+		PGA1_c30490	0.19	-0.6
3,184,974	-		PGA1_c30490	0.20	+1.4
3,184,974	-		PGA1_c30490	0.20	+0.4
3,184,976	+		PGA1_c30490	0.20	+1.2
3,184,976	-		PGA1_c30490	0.20	-0.8
3,184,976	-		PGA1_c30490	0.20	-0.1
3,185,010	+		PGA1_c30490	0.24	+0.6
3,185,022	+		PGA1_c30490	0.25	-2.2
3,185,022	+		PGA1_c30490	0.25	+1.1
3,185,028	+		PGA1_c30490	0.25	+0.2
3,185,030	-		PGA1_c30490	0.26	+1.1
3,185,030	-		PGA1_c30490	0.26	-1.8
3,185,105	-		PGA1_c30490	0.33	-1.2
3,185,129	-		PGA1_c30490	0.36	-0.4
3,185,227	+		PGA1_c30490	0.46	+0.1
3,185,227	+		PGA1_c30490	0.46	+0.5
3,185,234	-		PGA1_c30490	0.47	+0.7
3,185,270	-		PGA1_c30490	0.51	+0.5
3,185,278	+		PGA1_c30490	0.51	-1.0
3,185,279	-		PGA1_c30490	0.52	+0.8
3,185,279	-		PGA1_c30490	0.52	+1.2
3,185,293	+		PGA1_c30490	0.53	+1.0
3,185,342	+		PGA1_c30490	0.58	+0.6
3,185,342	+		PGA1_c30490	0.58	+0.6
3,185,350	-		PGA1_c30490	0.59	-1.6
3,185,350	-		PGA1_c30490	0.59	+1.2
3,185,350	-		PGA1_c30490	0.59	-0.1
3,185,350	-		PGA1_c30490	0.59	-0.1
3,185,350	-		PGA1_c30490	0.59	-1.2
3,185,380	-		PGA1_c30490	0.62	+2.2
3,185,485	+		PGA1_c30490	0.73	+0.3
3,185,490	+		PGA1_c30490	0.73	+0.1
3,185,519	-		PGA1_c30490	0.76	+0.4
3,185,565	+		PGA1_c30490	0.81	-0.2
3,185,576	+		PGA1_c30490	0.82	-0.8
3,185,576	+		PGA1_c30490	0.82	-1.4
3,185,623	+		PGA1_c30490	0.87	-1.6
3,185,631	-		PGA1_c30490	0.88	+1.0
3,185,631	-		PGA1_c30490	0.88	+0.8
3,185,681	-				-1.0
3,185,695	-				-2.3
3,185,695	-				+0.2
3,185,697	+				+1.6
3,185,697	+				+1.6
3,185,717	+				-1.3
3,185,725	-				+0.2
3,185,781	+				+0.4
3,185,782	-				-0.2
3,185,786	+				-2.1
3,185,815	-				-0.6
3,185,823	+				-0.3
3,185,825	-				+0.3
3,185,826	-				+0.4
3,185,834	+				+0.9
3,185,842	-				+0.5
3,185,844	+				-0.3
3,185,854	+				+0.6
3,185,854	+				+1.0
3,185,859	+				+2.4
3,185,927	+		PGA1_c30500	0.17	+1.7
3,185,935	-		PGA1_c30500	0.18	+0.8
3,186,002	+		PGA1_c30500	0.29	+1.5
3,186,002	+		PGA1_c30500	0.29	+2.2
3,186,002	+		PGA1_c30500	0.29	-0.0
3,186,002	+		PGA1_c30500	0.29	+0.2
3,186,002	+		PGA1_c30500	0.29	-2.1
3,186,007	+		PGA1_c30500	0.30	+1.0
3,186,007	+		PGA1_c30500	0.30	-1.1
3,186,007	+		PGA1_c30500	0.30	-0.4
3,186,007	+		PGA1_c30500	0.30	+0.8
3,186,010	-		PGA1_c30500	0.30	-0.0
3,186,010	-		PGA1_c30500	0.30	+0.6
3,186,010	-		PGA1_c30500	0.30	-1.5
3,186,010	-		PGA1_c30500	0.30	-0.2
3,186,010	-		PGA1_c30500	0.30	-0.2
3,186,026	+		PGA1_c30500	0.33	-1.8
3,186,145	-		PGA1_c30500	0.52	-0.8
3,186,153	-		PGA1_c30500	0.54	+1.5
3,186,153	-		PGA1_c30500	0.54	-0.7
3,186,167	-		PGA1_c30500	0.56	+0.2
3,186,182	-		PGA1_c30500	0.59	-0.1
3,186,193	+		PGA1_c30500	0.60	+1.3
3,186,261	-		PGA1_c30500	0.72	+1.5
3,186,282	+		PGA1_c30500	0.75	-1.0
3,186,287	+		PGA1_c30500	0.76	+1.1
3,186,290	-		PGA1_c30500	0.76	+0.6
3,186,290	-		PGA1_c30500	0.76	+0.7
3,186,295	-		PGA1_c30500	0.77	-0.1
3,186,328	-		PGA1_c30500	0.83	+0.4
3,186,336	+		PGA1_c30500	0.84	-1.0
3,186,345	+		PGA1_c30500	0.85	-0.4
3,186,346	+		PGA1_c30500	0.86	-0.8
3,186,387	+				+1.2
3,186,390	-				-1.6
3,186,390	-				+1.3
3,186,406	+				-2.4
3,186,414	-				+0.3
3,186,417	+				-2.6
3,186,422	-				+0.6
3,186,498	+				+1.9
3,186,505	-				-2.0
3,186,524	-				+1.6
3,186,558	+		PGA1_c30510	0.16	-0.4
3,186,576	+		PGA1_c30510	0.20	-2.2
3,186,584	-		PGA1_c30510	0.22	-0.5
3,186,584	-		PGA1_c30510	0.22	-2.8
3,186,584	-		PGA1_c30510	0.22	-1.4
3,186,599	+		PGA1_c30510	0.25	-1.8
3,186,599	-		PGA1_c30510	0.25	-2.5
3,186,602	-		PGA1_c30510	0.26	-0.5
3,186,607	-		PGA1_c30510	0.27	+1.3
3,186,678	+		PGA1_c30510	0.43	+0.4
3,186,678	+		PGA1_c30510	0.43	-1.2
3,186,712	+		PGA1_c30510	0.50	-0.8