Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02930 and PGA1_c02940 are separated by 77 nucleotides PGA1_c02940 and PGA1_c02950 are separated by 11 nucleotides PGA1_c02950 and PGA1_c02960 overlap by 4 nucleotides
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221
_c02950
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2 at 282.536 kb on - strand, within PGA1_c02930 at 282.538 kb on + strand, within PGA1_c02930 at 282.596 kb on + strand, within PGA1_c02930 at 282.600 kb on + strand, within PGA1_c02930 at 282.744 kb on - strand, within PGA1_c02930 at 282.794 kb on - strand, within PGA1_c02930 at 282.856 kb on + strand, within PGA1_c02930 at 282.872 kb on - strand, within PGA1_c02930 at 282.966 kb on - strand, within PGA1_c02930 at 282.979 kb on - strand, within PGA1_c02930 at 283.227 kb on + strand, within PGA1_c02930 at 283.237 kb on + strand, within PGA1_c02930 at 283.243 kb on + strand, within PGA1_c02930 at 283.285 kb on + strand at 283.293 kb on - strand at 283.305 kb on + strand at 283.383 kb on - strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.464 kb on - strand at 283.464 kb on - strand at 283.488 kb on - strand at 283.490 kb on + strand at 284.528 kb on + strand at 284.538 kb on + strand at 284.550 kb on + strand at 284.558 kb on - strand at 284.601 kb on + strand, within PGA1_c02950 at 284.621 kb on + strand, within PGA1_c02950 at 284.633 kb on + strand, within PGA1_c02950 at 284.639 kb on - strand, within PGA1_c02950 at 284.647 kb on + strand, within PGA1_c02950 at 284.672 kb on + strand, within PGA1_c02950 at 284.677 kb on + strand, within PGA1_c02950 at 284.798 kb on - strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.865 kb on + strand, within PGA1_c02950 at 284.873 kb on - strand, within PGA1_c02950 at 284.880 kb on + strand, within PGA1_c02950 at 284.908 kb on + strand, within PGA1_c02950 at 284.913 kb on - strand, within PGA1_c02950 at 284.962 kb on + strand, within PGA1_c02950 at 284.965 kb on - strand, within PGA1_c02950 at 285.000 kb on - strand, within PGA1_c02950 at 285.008 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.124 kb on - strand, within PGA1_c02950 at 285.130 kb on - strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.171 kb on + strand at 285.331 kb on - strand, within PGA1_c02960 at 285.341 kb on - strand, within PGA1_c02960 at 285.392 kb on + strand, within PGA1_c02960 at 285.433 kb on + strand, within PGA1_c02960
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 282,536 - PGA1_c02930 0.53 -1.6 282,538 + PGA1_c02930 0.53 -0.4 282,596 + PGA1_c02930 0.56 -1.4 282,600 + PGA1_c02930 0.56 -1.0 282,744 - PGA1_c02930 0.63 -0.0 282,794 - PGA1_c02930 0.66 -1.4 282,856 + PGA1_c02930 0.69 -0.9 282,872 - PGA1_c02930 0.70 -1.3 282,966 - PGA1_c02930 0.75 -1.4 282,979 - PGA1_c02930 0.76 -0.9 283,227 + PGA1_c02930 0.89 -1.3 283,237 + PGA1_c02930 0.89 -0.3 283,243 + PGA1_c02930 0.90 -1.6 283,285 + -0.4 283,293 - +0.9 283,305 + -0.5 283,383 - -0.3 283,456 + +1.0 283,456 + -2.1 283,456 + -1.0 283,456 + -2.2 283,464 - +0.2 283,464 - -1.9 283,488 - -0.7 283,490 + -2.2 284,528 + +1.2 284,538 + -1.0 284,550 + +0.2 284,558 - +1.6 284,601 + PGA1_c02950 0.15 +0.4 284,621 + PGA1_c02950 0.18 +0.9 284,633 + PGA1_c02950 0.19 +0.6 284,639 - PGA1_c02950 0.20 +1.1 284,647 + PGA1_c02950 0.21 -0.2 284,672 + PGA1_c02950 0.25 +0.1 284,677 + PGA1_c02950 0.25 +1.3 284,798 - PGA1_c02950 0.42 +0.2 284,810 + PGA1_c02950 0.43 -0.7 284,810 + PGA1_c02950 0.43 -0.8 284,865 + PGA1_c02950 0.51 +0.7 284,873 - PGA1_c02950 0.52 +0.3 284,880 + PGA1_c02950 0.53 -0.0 284,908 + PGA1_c02950 0.57 +1.2 284,913 - PGA1_c02950 0.58 +0.5 284,962 + PGA1_c02950 0.64 +0.2 284,965 - PGA1_c02950 0.65 -2.5 285,000 - PGA1_c02950 0.70 +1.1 285,008 - PGA1_c02950 0.71 +1.0 285,056 - PGA1_c02950 0.77 -0.9 285,056 - PGA1_c02950 0.77 -0.9 285,124 - PGA1_c02950 0.87 +0.5 285,130 - PGA1_c02950 0.87 +0.6 285,136 + PGA1_c02950 0.88 +1.2 285,136 + PGA1_c02950 0.88 -1.0 285,136 + PGA1_c02950 0.88 -0.9 285,144 - PGA1_c02950 0.89 +1.8 285,144 - PGA1_c02950 0.89 +0.5 285,144 - PGA1_c02950 0.89 -0.3 285,171 + +1.1 285,331 - PGA1_c02960 0.12 +1.7 285,341 - PGA1_c02960 0.14 +1.0 285,392 + PGA1_c02960 0.19 +0.2 285,433 + PGA1_c02960 0.24 -0.6
Or see this region's nucleotide sequence