Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28430

Experiment: Putrescine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine (N)
2,971,770	+		PGA1_c28410	0.88	-0.4
2,971,786	-				-1.4
2,971,872	-				-1.1
2,971,928	+				-0.7
2,972,096	+		PGA1_c28420	0.25	+2.4
2,972,125	+		PGA1_c28420	0.29	+0.2
2,972,141	-		PGA1_c28420	0.30	-2.1
2,972,166	-		PGA1_c28420	0.33	-0.3
2,972,174	-		PGA1_c28420	0.34	+1.4
2,972,181	-		PGA1_c28420	0.35	+0.0
2,972,194	-		PGA1_c28420	0.36	+1.0
2,972,244	+		PGA1_c28420	0.42	+0.9
2,972,252	-		PGA1_c28420	0.43	+0.2
2,972,300	+		PGA1_c28420	0.48	+0.4
2,972,300	+		PGA1_c28420	0.48	-1.0
2,972,308	-		PGA1_c28420	0.49	+0.8
2,972,334	-		PGA1_c28420	0.52	-0.8
2,972,338	-		PGA1_c28420	0.52	-0.4
2,972,389	-		PGA1_c28420	0.58	+1.1
2,972,389	-		PGA1_c28420	0.58	+0.1
2,972,424	-		PGA1_c28420	0.62	+1.7
2,972,493	-		PGA1_c28420	0.69	+0.6
2,972,581	-		PGA1_c28420	0.79	-0.5
2,972,582	-		PGA1_c28420	0.79	+0.8
2,972,660	-		PGA1_c28420	0.88	-0.7
2,972,663	+		PGA1_c28420	0.88	+0.4
2,972,793	+				-1.3
2,972,805	+				+0.8
2,972,825	+				+0.3
2,972,825	+				-0.3
2,972,825	+				+0.4
2,972,833	-				+0.6
2,972,877	+				-0.2
2,972,877	+				+1.0
2,972,882	+				+1.2
2,972,895	-		PGA1_c28430	0.11	-0.3
2,972,895	-		PGA1_c28430	0.11	+0.4
2,972,921	+		PGA1_c28430	0.13	+0.8
2,972,929	-		PGA1_c28430	0.14	+0.5
2,972,941	+		PGA1_c28430	0.15	+1.8
2,972,949	+		PGA1_c28430	0.16	+0.3
2,972,957	-		PGA1_c28430	0.16	-0.3
2,972,957	-		PGA1_c28430	0.16	+0.4
2,972,964	+		PGA1_c28430	0.17	-0.1
2,972,964	+		PGA1_c28430	0.17	-0.5
2,972,972	-		PGA1_c28430	0.18	+1.1
2,972,972	-		PGA1_c28430	0.18	+0.0
2,972,972	-		PGA1_c28430	0.18	-2.2
2,972,972	-		PGA1_c28430	0.18	+0.0
2,972,972	-		PGA1_c28430	0.18	+0.5
2,972,972	-		PGA1_c28430	0.18	-1.3
2,972,972	-		PGA1_c28430	0.18	+1.2
2,972,972	-		PGA1_c28430	0.18	-1.7
2,972,972	-		PGA1_c28430	0.18	+0.7
2,972,982	+		PGA1_c28430	0.18	-1.2
2,973,007	+		PGA1_c28430	0.21	-0.3
2,973,048	+		PGA1_c28430	0.24	-1.4
2,973,048	+		PGA1_c28430	0.24	+2.0
2,973,048	+		PGA1_c28430	0.24	-0.3
2,973,048	+		PGA1_c28430	0.24	+1.6
2,973,063	+		PGA1_c28430	0.25	-0.6
2,973,071	-		PGA1_c28430	0.26	-1.2
2,973,073	+		PGA1_c28430	0.26	-0.6
2,973,128	-		PGA1_c28430	0.31	-0.2
2,973,139	+		PGA1_c28430	0.32	-0.3
2,973,161	+		PGA1_c28430	0.34	+0.6
2,973,180	+		PGA1_c28430	0.36	+1.0
2,973,198	-		PGA1_c28430	0.37	-1.0
2,973,253	-		PGA1_c28430	0.42	-1.5
2,973,288	+		PGA1_c28430	0.45	+0.8
2,973,288	+		PGA1_c28430	0.45	-0.6
2,973,293	+		PGA1_c28430	0.45	+0.6
2,973,293	+		PGA1_c28430	0.45	-1.1
2,973,293	+		PGA1_c28430	0.45	+1.4
2,973,293	+		PGA1_c28430	0.45	+0.7
2,973,301	-		PGA1_c28430	0.46	+1.7
2,973,301	-		PGA1_c28430	0.46	+0.7
2,973,301	-		PGA1_c28430	0.46	+0.0
2,973,301	-		PGA1_c28430	0.46	-1.3
2,973,301	-		PGA1_c28430	0.46	-2.3
2,973,301	-		PGA1_c28430	0.46	+1.7
2,973,301	-		PGA1_c28430	0.46	+0.8
2,973,301	-		PGA1_c28430	0.46	-2.1
2,973,301	-		PGA1_c28430	0.46	-0.1
2,973,301	-		PGA1_c28430	0.46	+2.2
2,973,301	-		PGA1_c28430	0.46	+0.3
2,973,301	-		PGA1_c28430	0.46	+0.2
2,973,301	-		PGA1_c28430	0.46	-2.1
2,973,301	-		PGA1_c28430	0.46	-0.0
2,973,303	+		PGA1_c28430	0.46	+0.1
2,973,311	-		PGA1_c28430	0.47	+0.9
2,973,336	-		PGA1_c28430	0.49	+0.5
2,973,390	+		PGA1_c28430	0.54	-0.5
2,973,414	+		PGA1_c28430	0.56	+0.8
2,973,423	+		PGA1_c28430	0.57	+1.5
2,973,439	+		PGA1_c28430	0.58	+0.0
2,973,447	-		PGA1_c28430	0.59	-0.1
2,973,447	-		PGA1_c28430	0.59	-0.1
2,973,447	-		PGA1_c28430	0.59	-0.1
2,973,480	-		PGA1_c28430	0.61	+0.7
2,973,483	+		PGA1_c28430	0.62	+1.3
2,973,483	+		PGA1_c28430	0.62	+1.9
2,973,539	+		PGA1_c28430	0.67	-1.1
2,973,547	-		PGA1_c28430	0.67	-0.8
2,973,547	-		PGA1_c28430	0.67	-0.7
2,973,599	+		PGA1_c28430	0.72	+0.3
2,973,599	+		PGA1_c28430	0.72	+0.3
2,973,599	+		PGA1_c28430	0.72	+1.4
2,973,599	+		PGA1_c28430	0.72	+0.0
2,973,599	+		PGA1_c28430	0.72	+0.9
2,973,607	-		PGA1_c28430	0.72	+0.6
2,973,607	-		PGA1_c28430	0.72	+0.3
2,973,651	+		PGA1_c28430	0.76	-0.0
2,973,658	-		PGA1_c28430	0.77	+0.5
2,973,659	-		PGA1_c28430	0.77	-0.8
2,973,677	+		PGA1_c28430	0.78	+0.9
2,973,681	-		PGA1_c28430	0.79	+0.2
2,973,685	+		PGA1_c28430	0.79	+0.2
2,973,685	+		PGA1_c28430	0.79	+0.5
2,973,685	-		PGA1_c28430	0.79	-0.1
2,973,693	-		PGA1_c28430	0.80	-0.5
2,973,693	-		PGA1_c28430	0.80	+0.2
2,973,746	+		PGA1_c28430	0.84	-0.7
2,973,761	+		PGA1_c28430	0.86	+0.4
2,973,769	-		PGA1_c28430	0.86	-2.9
2,973,781	-		PGA1_c28430	0.87	+1.6
2,973,806	+		PGA1_c28430	0.90	-1.1
2,973,814	-				-0.1
2,973,815	+				+0.6
2,973,821	+				-0.1
2,973,823	-				-0.4
2,973,829	-				-1.2
2,973,835	+				-0.7
2,973,838	+				-1.7
2,973,845	+				+0.8
2,973,845	-				+0.7
2,973,860	-				+0.0
2,973,952	+				-0.1
2,973,956	+				+0.9
2,973,980	+				-2.4
2,973,980	+				-0.2
2,973,980	+				-0.3
2,973,980	+				+1.4
2,973,980	+				+0.5
2,973,980	+				-1.0
2,973,980	+				+0.0
2,973,980	+				+0.1
2,973,985	+				-1.4
2,973,985	+				+0.1
2,973,985	+				-0.3
2,973,985	+				+1.1
2,973,988	-				+0.5
2,973,988	-				-1.3
2,973,988	-				-0.1
2,973,988	-				+1.2
2,973,988	-				+0.3
2,973,988	-				+0.4
2,973,988	-				+1.3
2,973,988	-				+1.0
2,973,988	-				+0.7
2,973,988	-				+1.1
2,973,988	-				-1.0
2,973,993	-				-0.5
2,973,993	-				+0.2
2,973,993	-				-0.8
2,973,993	-				-1.0
2,973,996	+				-0.5
2,973,997	+				-0.1
2,973,998	-				+2.0
2,974,004	-				-0.0
2,974,012	+				-0.9
2,974,023	+				-0.8
2,974,023	+				+1.7
2,974,029	+				-1.5
2,974,029	+				-0.4
2,974,029	+				+0.9
2,974,029	+				-2.8
2,974,031	-				+0.2
2,974,031	-				-2.2
2,974,031	-				+0.0
2,974,031	-				+0.0
2,974,031	-				-2.1
2,974,031	-				-0.4
2,974,037	-				+1.5
2,974,037	-				+0.3
2,974,037	-				+0.0
2,974,037	-				+0.2
2,974,037	-				-1.0
2,974,037	-				-0.9
2,974,037	-				-0.2
2,974,037	-				+0.4
2,974,037	-				+0.6
2,974,037	-				-0.5
2,974,037	-				-0.5
2,974,037	-				-0.5
2,974,037	-				-0.1
2,974,037	-				+1.0
2,974,037	-				-1.0
2,974,037	-				+0.2
2,974,037	-				-0.3
2,974,073	+		PGA1_c28440	0.16	+0.4
2,974,074	+		PGA1_c28440	0.16	+1.0
2,974,140	-		PGA1_c28440	0.26	+0.5
2,974,200	+		PGA1_c28440	0.36	+0.0
2,974,296	+		PGA1_c28440	0.52	-1.4
2,974,323	+		PGA1_c28440	0.56	+1.9
2,974,328	+		PGA1_c28440	0.57	+0.7
2,974,336	+		PGA1_c28440	0.58	-1.4
2,974,338	+		PGA1_c28440	0.58	+0.2
2,974,346	-		PGA1_c28440	0.60	+0.2
2,974,346	-		PGA1_c28440	0.60	-0.4
2,974,351	-		PGA1_c28440	0.61	+0.4
2,974,352	+		PGA1_c28440	0.61	-1.1
2,974,378	+		PGA1_c28440	0.65	-0.7
2,974,384	-		PGA1_c28440	0.66	-1.1
2,974,415	-		PGA1_c28440	0.71	-2.0
2,974,448	-		PGA1_c28440	0.76	+0.2
2,974,450	-		PGA1_c28440	0.77	-0.3
2,974,473	+		PGA1_c28440	0.80	+0.1
2,974,485	-		PGA1_c28440	0.82	-1.7
2,974,523	-		PGA1_c28440	0.88	+0.1
2,974,537	+				+1.0
2,974,545	-				-0.4
2,974,593	+				-0.8
2,974,604	+				-0.3
2,974,642	+				-1.1
2,974,642	+				+1.0
2,974,662	+				+0.7
2,974,662	+				-0.5
2,974,662	+				+0.7
2,974,662	+				+0.7
2,974,664	+				+0.8
2,974,664	+				+0.8
2,974,670	-				-1.1
2,974,670	-				-0.9
2,974,670	-				-1.1
2,974,670	-				-0.1
2,974,670	-				+1.0
2,974,672	-				+0.5
2,974,686	+				-0.1
2,974,694	-				-0.7
2,974,718	-				-0.2
2,974,867	-		PGA1_c28450	0.16	-1.0
2,974,925	+		PGA1_c28450	0.19	-1.7
2,974,925	+		PGA1_c28450	0.19	-1.2