Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02530

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02520 and PGA1_c02530 overlap by 4 nucleotidesPGA1_c02530 and PGA1_c02540 are separated by 301 nucleotides PGA1_c02520: PGA1_c02520 - copper-transporting P-type ATPase ActP, at 236,064 to 238,580 _c02520 PGA1_c02530: PGA1_c02530 - HTH-type transcriptional regulator, at 238,577 to 238,981 _c02530 PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119 _c02540 Position (kb) 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 237.590 kb on + strand, within PGA1_c02520at 237.592 kb on - strand, within PGA1_c02520at 237.592 kb on - strand, within PGA1_c02520at 237.603 kb on + strand, within PGA1_c02520at 237.619 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.637 kb on + strand, within PGA1_c02520at 237.645 kb on - strand, within PGA1_c02520at 237.645 kb on - strand, within PGA1_c02520at 237.716 kb on + strand, within PGA1_c02520at 237.724 kb on - strand, within PGA1_c02520at 237.761 kb on + strand, within PGA1_c02520at 237.785 kb on - strand, within PGA1_c02520at 237.786 kb on - strand, within PGA1_c02520at 237.859 kb on - strand, within PGA1_c02520at 238.020 kb on - strand, within PGA1_c02520at 238.020 kb on - strand, within PGA1_c02520at 238.071 kb on + strand, within PGA1_c02520at 238.071 kb on + strand, within PGA1_c02520at 238.111 kb on + strand, within PGA1_c02520at 238.126 kb on + strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.155 kb on + strand, within PGA1_c02520at 238.155 kb on + strand, within PGA1_c02520at 238.163 kb on - strand, within PGA1_c02520at 238.169 kb on + strand, within PGA1_c02520at 238.186 kb on - strand, within PGA1_c02520at 238.193 kb on + strand, within PGA1_c02520at 238.239 kb on + strand, within PGA1_c02520at 238.239 kb on + strand, within PGA1_c02520at 238.266 kb on + strand, within PGA1_c02520at 238.271 kb on + strand, within PGA1_c02520at 238.271 kb on + strand, within PGA1_c02520at 238.279 kb on - strand, within PGA1_c02520at 238.284 kb on - strand, within PGA1_c02520at 238.350 kb on + strandat 238.401 kb on + strandat 238.407 kb on - strandat 238.450 kb on - strandat 238.462 kb on + strandat 238.495 kb on + strandat 238.495 kb on + strandat 238.495 kb on + strandat 238.500 kb on - strandat 238.531 kb on - strandat 238.531 kb on - strandat 238.562 kb on - strandat 238.574 kb on + strandat 238.582 kb on + strandat 238.592 kb on - strandat 238.621 kb on + strand, within PGA1_c02530at 238.621 kb on + strand, within PGA1_c02530at 238.623 kb on - strand, within PGA1_c02530at 238.646 kb on + strand, within PGA1_c02530at 238.649 kb on - strand, within PGA1_c02530at 238.650 kb on - strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.696 kb on + strand, within PGA1_c02530at 238.703 kb on - strand, within PGA1_c02530at 238.708 kb on - strand, within PGA1_c02530at 238.732 kb on - strand, within PGA1_c02530at 238.803 kb on + strand, within PGA1_c02530at 238.895 kb on + strand, within PGA1_c02530at 238.896 kb on - strand, within PGA1_c02530at 238.903 kb on - strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.921 kb on - strand, within PGA1_c02530at 238.921 kb on - strand, within PGA1_c02530at 238.922 kb on + strand, within PGA1_c02530at 238.932 kb on + strand, within PGA1_c02530at 238.932 kb on + strand, within PGA1_c02530at 238.940 kb on - strand, within PGA1_c02530at 239.033 kb on - strandat 239.033 kb on - strandat 239.033 kb on - strandat 239.033 kb on - strandat 239.053 kb on + strandat 239.071 kb on + strandat 239.071 kb on + strandat 239.073 kb on + strandat 239.079 kb on - strandat 239.079 kb on - strandat 239.079 kb on - strandat 239.080 kb on - strandat 239.081 kb on - strandat 239.217 kb on - strandat 239.217 kb on - strandat 239.242 kb on - strandat 239.259 kb on - strandat 239.259 kb on - strandat 239.264 kb on - strandat 239.271 kb on - strandat 239.313 kb on + strandat 239.331 kb on + strandat 239.371 kb on - strand, within PGA1_c02540at 239.371 kb on - strand, within PGA1_c02540at 239.374 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540at 239.637 kb on - strand, within PGA1_c02540at 239.724 kb on - strand, within PGA1_c02540at 239.729 kb on - strand, within PGA1_c02540at 239.807 kb on - strand, within PGA1_c02540at 239.866 kb on + strand, within PGA1_c02540at 239.866 kb on + strand, within PGA1_c02540at 239.883 kb on + strand, within PGA1_c02540at 239.883 kb on + strand, within PGA1_c02540at 239.888 kb on + strand, within PGA1_c02540at 239.898 kb on + strand, within PGA1_c02540at 239.906 kb on - strand, within PGA1_c02540at 239.974 kb on - strand, within PGA1_c02540

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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237,590 + PGA1_c02520 0.61 -1.1
237,592 - PGA1_c02520 0.61 -3.9
237,592 - PGA1_c02520 0.61 -2.8
237,603 + PGA1_c02520 0.61 -2.8
237,619 + PGA1_c02520 0.62 -1.1
237,627 + PGA1_c02520 0.62 -2.9
237,627 + PGA1_c02520 0.62 -0.8
237,627 + PGA1_c02520 0.62 -1.7
237,637 + PGA1_c02520 0.62 -2.3
237,645 - PGA1_c02520 0.63 -2.2
237,645 - PGA1_c02520 0.63 -1.8
237,716 + PGA1_c02520 0.66 -2.1
237,724 - PGA1_c02520 0.66 -3.4
237,761 + PGA1_c02520 0.67 -2.9
237,785 - PGA1_c02520 0.68 -3.9
237,786 - PGA1_c02520 0.68 -1.4
237,859 - PGA1_c02520 0.71 -2.8
238,020 - PGA1_c02520 0.78 -2.3
238,020 - PGA1_c02520 0.78 -1.3
238,071 + PGA1_c02520 0.80 -3.4
238,071 + PGA1_c02520 0.80 -1.7
238,111 + PGA1_c02520 0.81 -2.7
238,126 + PGA1_c02520 0.82 -1.8
238,134 - PGA1_c02520 0.82 -4.2
238,134 - PGA1_c02520 0.82 -0.8
238,134 - PGA1_c02520 0.82 -3.0
238,155 + PGA1_c02520 0.83 -1.8
238,155 + PGA1_c02520 0.83 -1.6
238,163 - PGA1_c02520 0.83 -0.4
238,169 + PGA1_c02520 0.84 -3.0
238,186 - PGA1_c02520 0.84 -0.9
238,193 + PGA1_c02520 0.85 -1.9
238,239 + PGA1_c02520 0.86 -2.6
238,239 + PGA1_c02520 0.86 -3.3
238,266 + PGA1_c02520 0.87 -2.8
238,271 + PGA1_c02520 0.88 -0.1
238,271 + PGA1_c02520 0.88 -2.8
238,279 - PGA1_c02520 0.88 -2.5
238,284 - PGA1_c02520 0.88 -2.5
238,350 + -1.5
238,401 + -3.2
238,407 - -2.4
238,450 - -2.7
238,462 + -0.8
238,495 + +0.6
238,495 + -1.9
238,495 + -0.1
238,500 - +0.2
238,531 - -0.7
238,531 - -0.5
238,562 - -2.1
238,574 + -0.2
238,582 + -0.6
238,592 - -2.0
238,621 + PGA1_c02530 0.11 -1.9
238,621 + PGA1_c02530 0.11 -2.1
238,623 - PGA1_c02530 0.11 -0.1
238,646 + PGA1_c02530 0.17 -0.1
238,649 - PGA1_c02530 0.18 -1.3
238,650 - PGA1_c02530 0.18 +1.0
238,651 + PGA1_c02530 0.18 -1.5
238,651 + PGA1_c02530 0.18 +0.2
238,651 + PGA1_c02530 0.18 +0.8
238,696 + PGA1_c02530 0.29 -0.1
238,703 - PGA1_c02530 0.31 -0.4
238,708 - PGA1_c02530 0.32 -0.9
238,732 - PGA1_c02530 0.38 -2.8
238,803 + PGA1_c02530 0.56 -2.8
238,895 + PGA1_c02530 0.79 -1.1
238,896 - PGA1_c02530 0.79 -1.7
238,903 - PGA1_c02530 0.80 -1.6
238,913 + PGA1_c02530 0.83 -1.0
238,913 + PGA1_c02530 0.83 -1.9
238,913 + PGA1_c02530 0.83 -0.5
238,913 + PGA1_c02530 0.83 -1.1
238,913 + PGA1_c02530 0.83 -1.8
238,921 - PGA1_c02530 0.85 -2.0
238,921 - PGA1_c02530 0.85 -1.2
238,922 + PGA1_c02530 0.85 -2.1
238,932 + PGA1_c02530 0.88 +0.6
238,932 + PGA1_c02530 0.88 -0.2
238,940 - PGA1_c02530 0.90 -0.9
239,033 - -0.7
239,033 - -1.3
239,033 - +0.3
239,033 - +0.1
239,053 + -2.6
239,071 + -1.8
239,071 + -0.8
239,073 + +2.1
239,079 - +0.8
239,079 - -0.1
239,079 - -2.0
239,080 - +0.3
239,081 - +0.5
239,217 - +0.8
239,217 - +1.4
239,242 - -0.1
239,259 - -0.1
239,259 - -1.8
239,264 - -1.1
239,271 - +0.9
239,313 + -0.3
239,331 + +1.0
239,371 - PGA1_c02540 0.11 -0.1
239,371 - PGA1_c02540 0.11 -1.0
239,374 + PGA1_c02540 0.11 +0.7
239,548 + PGA1_c02540 0.32 -1.7
239,548 + PGA1_c02540 0.32 -2.7
239,637 - PGA1_c02540 0.42 +0.7
239,724 - PGA1_c02540 0.53 +2.0
239,729 - PGA1_c02540 0.53 +1.0
239,807 - PGA1_c02540 0.63 +1.0
239,866 + PGA1_c02540 0.70 +0.0
239,866 + PGA1_c02540 0.70 +1.0
239,883 + PGA1_c02540 0.72 +0.0
239,883 + PGA1_c02540 0.72 +0.4
239,888 + PGA1_c02540 0.72 -0.8
239,898 + PGA1_c02540 0.73 -1.3
239,906 - PGA1_c02540 0.74 -1.0
239,974 - PGA1_c02540 0.83 +0.1

Or see this region's nucleotide sequence