Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26465 and BWI76_RS26470 overlap by 1 nucleotides BWI76_RS26470 and BWI76_RS26475 overlap by 4 nucleotides BWI76_RS26475 and BWI76_RS26480 overlap by 4 nucleotides BWI76_RS26480 and BWI76_RS26485 are separated by 1 nucleotides
BWI76_RS26465: BWI76_RS26465 - 4-amino-4-deoxy-L-arabinose lipid A transferase, at 5,476,074 to 5,477,729
_RS26465
BWI76_RS26470: BWI76_RS26470 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 5,477,729 to 5,478,631
_RS26470
BWI76_RS26475: BWI76_RS26475 - bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,478,628 to 5,480,613
_RS26475
BWI76_RS26480: BWI76_RS26480 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,480,610 to 5,481,593
_RS26480
BWI76_RS26485: BWI76_RS26485 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase, at 5,481,595 to 5,482,734
_RS26485
Position (kb) 5478
5479
5480
5481 Strain fitness (log2 ratio) -1
0
1
2 at 5477.639 kb on - strand at 5477.842 kb on + strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.940 kb on + strand, within BWI76_RS26470 at 5477.948 kb on - strand, within BWI76_RS26470 at 5478.061 kb on - strand, within BWI76_RS26470 at 5478.102 kb on - strand, within BWI76_RS26470 at 5478.282 kb on + strand, within BWI76_RS26470 at 5478.498 kb on + strand, within BWI76_RS26470 at 5478.649 kb on + strand at 5478.673 kb on + strand at 5478.684 kb on + strand at 5478.753 kb on + strand at 5478.809 kb on - strand at 5478.855 kb on + strand, within BWI76_RS26475 at 5478.963 kb on - strand at 5479.037 kb on - strand, within BWI76_RS26475 at 5479.057 kb on - strand, within BWI76_RS26475 at 5479.171 kb on + strand, within BWI76_RS26475 at 5479.229 kb on + strand, within BWI76_RS26475 at 5479.263 kb on + strand, within BWI76_RS26475 at 5479.375 kb on - strand, within BWI76_RS26475 at 5479.439 kb on + strand, within BWI76_RS26475 at 5479.476 kb on - strand, within BWI76_RS26475 at 5479.501 kb on + strand, within BWI76_RS26475 at 5479.580 kb on - strand, within BWI76_RS26475 at 5479.699 kb on + strand, within BWI76_RS26475 at 5479.707 kb on - strand, within BWI76_RS26475 at 5480.260 kb on + strand, within BWI76_RS26475 at 5480.307 kb on + strand at 5480.455 kb on + strand at 5480.515 kb on - strand at 5480.571 kb on - strand at 5480.726 kb on + strand, within BWI76_RS26480 at 5481.049 kb on + strand, within BWI76_RS26480 at 5481.054 kb on - strand, within BWI76_RS26480 at 5481.203 kb on - strand, within BWI76_RS26480 at 5481.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,477,639 - +2.4 5,477,842 + BWI76_RS26470 0.13 +2.1 5,477,890 - BWI76_RS26470 0.18 +2.0 5,477,890 - BWI76_RS26470 0.18 +1.8 5,477,940 + BWI76_RS26470 0.23 +2.1 5,477,948 - BWI76_RS26470 0.24 +2.5 5,478,061 - BWI76_RS26470 0.37 +2.3 5,478,102 - BWI76_RS26470 0.41 +2.4 5,478,282 + BWI76_RS26470 0.61 +1.6 5,478,498 + BWI76_RS26470 0.85 +2.1 5,478,649 + +1.9 5,478,673 + +1.8 5,478,684 + +2.1 5,478,753 + +1.6 5,478,809 - +2.4 5,478,855 + BWI76_RS26475 0.11 +2.2 5,478,963 - +2.2 5,479,037 - BWI76_RS26475 0.21 +2.1 5,479,057 - BWI76_RS26475 0.22 +0.5 5,479,171 + BWI76_RS26475 0.27 +1.8 5,479,229 + BWI76_RS26475 0.30 +1.2 5,479,263 + BWI76_RS26475 0.32 +1.6 5,479,375 - BWI76_RS26475 0.38 +1.6 5,479,439 + BWI76_RS26475 0.41 +1.4 5,479,476 - BWI76_RS26475 0.43 +1.9 5,479,501 + BWI76_RS26475 0.44 +1.7 5,479,580 - BWI76_RS26475 0.48 +1.8 5,479,699 + BWI76_RS26475 0.54 +1.7 5,479,707 - BWI76_RS26475 0.54 +2.1 5,480,260 + BWI76_RS26475 0.82 +1.9 5,480,307 + +2.6 5,480,455 + +2.2 5,480,515 - +2.0 5,480,571 - +2.1 5,480,726 + BWI76_RS26480 0.12 +1.9 5,481,049 + BWI76_RS26480 0.45 +1.8 5,481,054 - BWI76_RS26480 0.45 +1.9 5,481,203 - BWI76_RS26480 0.60 +1.5 5,481,598 - +0.9
Or see this region's nucleotide sequence