Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26450 and BWI76_RS26455 overlap by 4 nucleotides BWI76_RS26455 and BWI76_RS26460 overlap by 1 nucleotides BWI76_RS26460 and BWI76_RS26465 overlap by 4 nucleotides BWI76_RS26465 and BWI76_RS26470 overlap by 1 nucleotides BWI76_RS26470 and BWI76_RS26475 overlap by 4 nucleotides
BWI76_RS26450: BWI76_RS26450 - hypothetical protein, at 5,474,310 to 5,475,359
_RS26450
BWI76_RS26455: BWI76_RS26455 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 5,475,356 to 5,475,739
_RS26455
BWI76_RS26460: BWI76_RS26460 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 5,475,739 to 5,476,077
_RS26460
BWI76_RS26465: BWI76_RS26465 - 4-amino-4-deoxy-L-arabinose lipid A transferase, at 5,476,074 to 5,477,729
_RS26465
BWI76_RS26470: BWI76_RS26470 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 5,477,729 to 5,478,631
_RS26470
BWI76_RS26475: BWI76_RS26475 - bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,478,628 to 5,480,613
_RS26475
Position (kb) 5476
5477
5478 Strain fitness (log2 ratio) -1
0
1
2 at 5475.163 kb on + strand, within BWI76_RS26450 at 5475.178 kb on + strand, within BWI76_RS26450 at 5475.186 kb on - strand, within BWI76_RS26450 at 5475.482 kb on - strand, within BWI76_RS26455 at 5475.482 kb on - strand, within BWI76_RS26455 at 5475.719 kb on - strand at 5475.867 kb on + strand, within BWI76_RS26460 at 5475.872 kb on + strand, within BWI76_RS26460 at 5475.875 kb on - strand, within BWI76_RS26460 at 5475.880 kb on - strand, within BWI76_RS26460 at 5475.967 kb on + strand, within BWI76_RS26460 at 5476.026 kb on + strand, within BWI76_RS26460 at 5476.036 kb on + strand, within BWI76_RS26460 at 5476.044 kb on - strand at 5476.211 kb on + strand at 5476.264 kb on + strand, within BWI76_RS26465 at 5476.272 kb on - strand, within BWI76_RS26465 at 5476.740 kb on - strand, within BWI76_RS26465 at 5476.771 kb on - strand, within BWI76_RS26465 at 5476.792 kb on + strand, within BWI76_RS26465 at 5476.794 kb on - strand, within BWI76_RS26465 at 5476.843 kb on + strand, within BWI76_RS26465 at 5476.843 kb on + strand, within BWI76_RS26465 at 5477.022 kb on - strand, within BWI76_RS26465 at 5477.153 kb on + strand, within BWI76_RS26465 at 5477.166 kb on - strand, within BWI76_RS26465 at 5477.226 kb on + strand, within BWI76_RS26465 at 5477.453 kb on + strand, within BWI76_RS26465 at 5477.508 kb on + strand, within BWI76_RS26465 at 5477.639 kb on - strand at 5477.842 kb on + strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.940 kb on + strand, within BWI76_RS26470 at 5477.948 kb on - strand, within BWI76_RS26470 at 5478.061 kb on - strand, within BWI76_RS26470 at 5478.102 kb on - strand, within BWI76_RS26470 at 5478.282 kb on + strand, within BWI76_RS26470 at 5478.498 kb on + strand, within BWI76_RS26470 at 5478.649 kb on + strand at 5478.673 kb on + strand at 5478.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,475,163 + BWI76_RS26450 0.81 -0.1 5,475,178 + BWI76_RS26450 0.83 +0.6 5,475,186 - BWI76_RS26450 0.83 +0.5 5,475,482 - BWI76_RS26455 0.33 +1.4 5,475,482 - BWI76_RS26455 0.33 +2.0 5,475,719 - +1.6 5,475,867 + BWI76_RS26460 0.38 +1.1 5,475,872 + BWI76_RS26460 0.39 +1.9 5,475,875 - BWI76_RS26460 0.40 +2.0 5,475,880 - BWI76_RS26460 0.42 +1.4 5,475,967 + BWI76_RS26460 0.67 +1.7 5,476,026 + BWI76_RS26460 0.85 +1.4 5,476,036 + BWI76_RS26460 0.88 +1.2 5,476,044 - +1.2 5,476,211 + +2.1 5,476,264 + BWI76_RS26465 0.11 +1.9 5,476,272 - BWI76_RS26465 0.12 +2.0 5,476,740 - BWI76_RS26465 0.40 +2.3 5,476,771 - BWI76_RS26465 0.42 +1.9 5,476,792 + BWI76_RS26465 0.43 +2.2 5,476,794 - BWI76_RS26465 0.43 +2.4 5,476,843 + BWI76_RS26465 0.46 +2.0 5,476,843 + BWI76_RS26465 0.46 +1.9 5,477,022 - BWI76_RS26465 0.57 +2.2 5,477,153 + BWI76_RS26465 0.65 +2.1 5,477,166 - BWI76_RS26465 0.66 +1.9 5,477,226 + BWI76_RS26465 0.70 +2.3 5,477,453 + BWI76_RS26465 0.83 +1.8 5,477,508 + BWI76_RS26465 0.87 +1.3 5,477,639 - +2.4 5,477,842 + BWI76_RS26470 0.13 +2.1 5,477,890 - BWI76_RS26470 0.18 +2.0 5,477,890 - BWI76_RS26470 0.18 +1.8 5,477,940 + BWI76_RS26470 0.23 +2.1 5,477,948 - BWI76_RS26470 0.24 +2.5 5,478,061 - BWI76_RS26470 0.37 +2.3 5,478,102 - BWI76_RS26470 0.41 +2.4 5,478,282 + BWI76_RS26470 0.61 +1.6 5,478,498 + BWI76_RS26470 0.85 +2.1 5,478,649 + +1.9 5,478,673 + +1.8 5,478,684 + +2.1
Or see this region's nucleotide sequence