Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26245 and BWI76_RS26250 are separated by 114 nucleotides BWI76_RS26250 and BWI76_RS26255 are separated by 121 nucleotides BWI76_RS26255 and BWI76_RS26260 are separated by 232 nucleotides BWI76_RS26260 and BWI76_RS26265 overlap by 26 nucleotides
BWI76_RS26245: BWI76_RS26245 - transcriptional regulator, at 5,433,633 to 5,434,628
_RS26245
BWI76_RS26250: BWI76_RS26250 - quercetin 2,3-dioxygenase, at 5,434,743 to 5,435,438
_RS26250
BWI76_RS26255: BWI76_RS26255 - oxidoreductase, at 5,435,560 to 5,436,597
_RS26255
BWI76_RS26260: BWI76_RS26260 - hypothetical protein, at 5,436,830 to 5,437,468
_RS26260
BWI76_RS26265: BWI76_RS26265 - hypothetical protein, at 5,437,443 to 5,437,673
_RS26265
Position (kb) 5435
5436
5437 Strain fitness (log2 ratio) -1
0
1
2 at 5434.826 kb on + strand, within BWI76_RS26250 at 5434.863 kb on + strand, within BWI76_RS26250 at 5434.933 kb on - strand, within BWI76_RS26250 at 5435.013 kb on + strand, within BWI76_RS26250 at 5435.019 kb on + strand, within BWI76_RS26250 at 5435.048 kb on - strand, within BWI76_RS26250 at 5435.132 kb on - strand, within BWI76_RS26250 at 5435.132 kb on - strand, within BWI76_RS26250 at 5435.142 kb on - strand, within BWI76_RS26250 at 5435.399 kb on - strand at 5435.539 kb on + strand at 5435.595 kb on + strand at 5435.595 kb on + strand at 5435.595 kb on + strand at 5435.603 kb on - strand at 5435.624 kb on - strand at 5435.749 kb on - strand, within BWI76_RS26255 at 5435.878 kb on - strand, within BWI76_RS26255 at 5435.936 kb on + strand, within BWI76_RS26255 at 5435.948 kb on + strand, within BWI76_RS26255 at 5436.000 kb on + strand, within BWI76_RS26255 at 5436.011 kb on + strand, within BWI76_RS26255 at 5436.068 kb on - strand, within BWI76_RS26255 at 5436.091 kb on + strand, within BWI76_RS26255 at 5436.310 kb on - strand, within BWI76_RS26255 at 5436.412 kb on + strand, within BWI76_RS26255 at 5436.448 kb on + strand, within BWI76_RS26255 at 5436.586 kb on + strand at 5436.618 kb on + strand at 5436.660 kb on - strand at 5436.731 kb on - strand at 5436.803 kb on + strand at 5436.868 kb on + strand at 5436.946 kb on - strand, within BWI76_RS26260 at 5437.050 kb on - strand, within BWI76_RS26260 at 5437.094 kb on - strand, within BWI76_RS26260 at 5437.123 kb on + strand, within BWI76_RS26260 at 5437.220 kb on - strand, within BWI76_RS26260 at 5437.335 kb on - strand, within BWI76_RS26260
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,434,826 + BWI76_RS26250 0.12 +0.6 5,434,863 + BWI76_RS26250 0.17 +0.9 5,434,933 - BWI76_RS26250 0.27 -0.4 5,435,013 + BWI76_RS26250 0.39 +0.6 5,435,019 + BWI76_RS26250 0.40 +0.0 5,435,048 - BWI76_RS26250 0.44 +0.1 5,435,132 - BWI76_RS26250 0.56 +0.0 5,435,132 - BWI76_RS26250 0.56 +0.6 5,435,142 - BWI76_RS26250 0.57 -0.2 5,435,399 - -0.2 5,435,539 + -0.1 5,435,595 + -0.2 5,435,595 + -0.4 5,435,595 + +0.3 5,435,603 - +0.0 5,435,624 - -0.5 5,435,749 - BWI76_RS26255 0.18 +0.0 5,435,878 - BWI76_RS26255 0.31 +2.1 5,435,936 + BWI76_RS26255 0.36 -0.8 5,435,948 + BWI76_RS26255 0.37 +0.1 5,436,000 + BWI76_RS26255 0.42 +0.6 5,436,011 + BWI76_RS26255 0.43 -0.1 5,436,068 - BWI76_RS26255 0.49 +0.8 5,436,091 + BWI76_RS26255 0.51 +0.3 5,436,310 - BWI76_RS26255 0.72 +0.9 5,436,412 + BWI76_RS26255 0.82 +0.1 5,436,448 + BWI76_RS26255 0.86 -0.1 5,436,586 + -0.1 5,436,618 + -0.3 5,436,660 - -0.1 5,436,731 - -0.3 5,436,803 + -0.0 5,436,868 + +0.5 5,436,946 - BWI76_RS26260 0.18 +0.0 5,437,050 - BWI76_RS26260 0.34 -0.3 5,437,094 - BWI76_RS26260 0.41 -0.6 5,437,123 + BWI76_RS26260 0.46 -0.6 5,437,220 - BWI76_RS26260 0.61 -0.1 5,437,335 - BWI76_RS26260 0.79 +0.1
Or see this region's nucleotide sequence