Experiment: BHIS with Cephalothin 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0795 and BT0796 are separated by 338 nucleotides BT0796 and BT0797 are separated by 204 nucleotides BT0797 and BT0798 are separated by 77 nucleotides BT0798 and BT0799 are separated by 10 nucleotides
BT0795: BT0795 - conserved hypothetical protein (NCBI ptt file), at 986,000 to 986,620
BT0795
BT0796: BT0796 - conserved hypothetical protein (NCBI ptt file), at 986,959 to 988,293
BT0796
BT0797: BT0797 - transcriptional regulator, ArsR family (NCBI ptt file), at 988,498 to 988,767
BT0797
BT0798: BT0798 - conserved hypothetical protein (NCBI ptt file), at 988,845 to 989,078
BT0798
BT0799: BT0799 - hypothetical protein (NCBI ptt file), at 989,089 to 989,532
BT0799
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 986.060 kb on - strand at 986.061 kb on + strand at 986.061 kb on + strand at 986.062 kb on - strand, within BT0795 at 986.205 kb on - strand, within BT0795 at 986.423 kb on + strand, within BT0795 at 986.466 kb on - strand, within BT0795 at 986.469 kb on - strand, within BT0795 at 986.484 kb on - strand, within BT0795 at 986.488 kb on + strand, within BT0795 at 986.489 kb on - strand, within BT0795 at 986.515 kb on + strand, within BT0795 at 986.560 kb on - strand at 986.658 kb on - strand at 986.658 kb on - strand at 986.729 kb on - strand at 986.739 kb on - strand at 986.783 kb on - strand at 987.047 kb on - strand at 987.258 kb on + strand, within BT0796 at 987.258 kb on + strand, within BT0796 at 987.368 kb on - strand, within BT0796 at 987.435 kb on - strand, within BT0796 at 987.495 kb on + strand, within BT0796 at 987.579 kb on + strand, within BT0796 at 987.630 kb on + strand, within BT0796 at 987.631 kb on - strand, within BT0796 at 987.738 kb on + strand, within BT0796 at 987.739 kb on - strand, within BT0796 at 987.903 kb on - strand, within BT0796 at 987.985 kb on + strand, within BT0796 at 988.052 kb on + strand, within BT0796 at 988.052 kb on + strand, within BT0796 at 988.052 kb on + strand, within BT0796 at 988.213 kb on + strand at 988.214 kb on - strand at 988.227 kb on + strand at 988.249 kb on + strand at 988.249 kb on + strand at 988.291 kb on + strand at 988.341 kb on + strand at 988.373 kb on + strand at 988.435 kb on - strand at 988.456 kb on + strand at 988.672 kb on + strand, within BT0797 at 988.677 kb on + strand, within BT0797 at 988.681 kb on - strand, within BT0797 at 988.737 kb on + strand, within BT0797 at 988.737 kb on + strand, within BT0797 at 988.830 kb on - strand at 988.834 kb on + strand at 988.859 kb on - strand at 988.894 kb on - strand, within BT0798 at 988.977 kb on + strand, within BT0798 at 989.129 kb on + strand at 989.130 kb on - strand at 989.236 kb on - strand, within BT0799 at 989.262 kb on + strand, within BT0799
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Cephalothin 0.2 mM remove 986,060 - -3.4 986,061 + -2.8 986,061 + -3.2 986,062 - BT0795 0.10 -2.4 986,205 - BT0795 0.33 -2.9 986,423 + BT0795 0.68 -3.3 986,466 - BT0795 0.75 -1.1 986,469 - BT0795 0.76 +3.0 986,484 - BT0795 0.78 +2.7 986,488 + BT0795 0.79 -1.1 986,489 - BT0795 0.79 -2.9 986,515 + BT0795 0.83 -0.1 986,560 - -1.1 986,658 - -4.1 986,658 - -1.5 986,729 - -3.3 986,739 - -0.1 986,783 - -0.1 987,047 - -0.0 987,258 + BT0796 0.22 -0.0 987,258 + BT0796 0.22 -1.6 987,368 - BT0796 0.31 +1.0 987,435 - BT0796 0.36 -0.0 987,495 + BT0796 0.40 -1.4 987,579 + BT0796 0.46 -2.6 987,630 + BT0796 0.50 -1.6 987,631 - BT0796 0.50 -2.0 987,738 + BT0796 0.58 +3.0 987,739 - BT0796 0.58 -0.5 987,903 - BT0796 0.71 -0.6 987,985 + BT0796 0.77 -1.0 988,052 + BT0796 0.82 +1.3 988,052 + BT0796 0.82 +1.8 988,052 + BT0796 0.82 -1.1 988,213 + -2.6 988,214 - -3.7 988,227 + -1.0 988,249 + -0.0 988,249 + -3.4 988,291 + -3.0 988,341 + -0.0 988,373 + -2.4 988,435 - -1.0 988,456 + -1.0 988,672 + BT0797 0.64 -3.1 988,677 + BT0797 0.66 -2.6 988,681 - BT0797 0.68 +2.0 988,737 + BT0797 0.89 -2.2 988,737 + BT0797 0.89 -1.0 988,830 - -0.6 988,834 + -0.0 988,859 - -1.9 988,894 - BT0798 0.21 -2.5 988,977 + BT0798 0.56 +3.1 989,129 + -0.6 989,130 - -3.2 989,236 - BT0799 0.33 -1.6 989,262 + BT0799 0.39 -1.0
Or see this region's nucleotide sequence