Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0135 and SO0136 are separated by 26 nucleotides SO0136 and moeB are separated by 49 nucleotides moeB and moeA are separated by 11 nucleotides
SO0135: SO0135 - hemolysin protein, putative (NCBI ptt file), at 142,352 to 142,642
SO0135
SO0136: SO0136 - hypothetical protein (NCBI ptt file), at 142,669 to 143,331
SO0136
SO0137: moeB - molybdopterin biosynthesis MoeB protein (NCBI ptt file), at 143,381 to 144,142
moeB
SO0138: moeA - molybdopterin biosynthesis MoeA protein (NCBI ptt file), at 144,154 to 145,407
moeA
Position (kb) 143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 142.438 kb on - strand, within SO0135 at 142.453 kb on + strand, within SO0135 at 142.491 kb on + strand, within SO0135 at 142.550 kb on - strand, within SO0135 at 142.556 kb on - strand, within SO0135 at 142.701 kb on + strand at 142.906 kb on + strand, within SO0136 at 143.146 kb on - strand, within SO0136 at 143.177 kb on - strand, within SO0136 at 143.363 kb on + strand at 143.370 kb on + strand at 143.378 kb on - strand at 143.378 kb on - strand at 143.509 kb on + strand, within moeB at 143.581 kb on - strand, within moeB at 143.597 kb on - strand, within moeB at 143.698 kb on + strand, within moeB at 143.713 kb on + strand, within moeB at 143.720 kb on - strand, within moeB at 143.721 kb on - strand, within moeB at 143.878 kb on - strand, within moeB at 143.879 kb on - strand, within moeB at 143.913 kb on - strand, within moeB at 143.919 kb on + strand, within moeB at 143.919 kb on + strand, within moeB at 143.929 kb on + strand, within moeB at 143.992 kb on - strand, within moeB at 143.992 kb on - strand, within moeB at 143.992 kb on - strand, within moeB at 144.010 kb on - strand, within moeB at 144.031 kb on - strand, within moeB at 144.162 kb on + strand at 144.177 kb on - strand at 144.177 kb on - strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.220 kb on - strand at 144.306 kb on - strand, within moeA at 144.322 kb on + strand, within moeA at 144.376 kb on + strand, within moeA at 144.419 kb on - strand, within moeA at 144.528 kb on - strand, within moeA at 144.591 kb on - strand, within moeA at 144.651 kb on - strand, within moeA at 144.717 kb on - strand, within moeA at 144.876 kb on + strand, within moeA at 144.876 kb on + strand, within moeA at 144.876 kb on + strand, within moeA at 144.884 kb on - strand, within moeA at 144.900 kb on + strand, within moeA at 144.955 kb on + strand, within moeA at 144.983 kb on + strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.060 kb on - strand, within moeA at 145.062 kb on - strand, within moeA at 145.062 kb on - strand, within moeA at 145.112 kb on + strand, within moeA at 145.127 kb on - strand, within moeA
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 142,438 - SO0135 0.30 +0.5 142,453 + SO0135 0.35 +0.5 142,491 + SO0135 0.48 +0.4 142,550 - SO0135 0.68 -0.7 142,556 - SO0135 0.70 -0.1 142,701 + -0.5 142,906 + SO0136 0.36 -0.1 143,146 - SO0136 0.72 +0.4 143,177 - SO0136 0.77 -0.2 143,363 + -0.1 143,370 + +0.8 143,378 - -0.3 143,378 - -0.1 143,509 + moeB SO0137 0.17 -1.3 143,581 - moeB SO0137 0.26 +1.5 143,597 - moeB SO0137 0.28 -1.1 143,698 + moeB SO0137 0.42 -1.7 143,713 + moeB SO0137 0.44 -3.2 143,720 - moeB SO0137 0.44 -0.3 143,721 - moeB SO0137 0.45 -1.0 143,878 - moeB SO0137 0.65 -0.1 143,879 - moeB SO0137 0.65 -1.3 143,913 - moeB SO0137 0.70 -0.4 143,919 + moeB SO0137 0.71 -0.3 143,919 + moeB SO0137 0.71 -0.3 143,929 + moeB SO0137 0.72 -0.9 143,992 - moeB SO0137 0.80 +1.5 143,992 - moeB SO0137 0.80 -0.9 143,992 - moeB SO0137 0.80 +0.2 144,010 - moeB SO0137 0.83 -2.8 144,031 - moeB SO0137 0.85 +0.1 144,162 + +0.6 144,177 - +0.1 144,177 - +0.5 144,212 + +0.4 144,212 + -0.1 144,220 - +0.2 144,220 - +0.3 144,220 - -1.2 144,220 - +0.7 144,220 - -0.5 144,220 - -0.1 144,220 - -0.3 144,306 - moeA SO0138 0.12 +0.1 144,322 + moeA SO0138 0.13 -1.4 144,376 + moeA SO0138 0.18 +0.1 144,419 - moeA SO0138 0.21 +0.8 144,528 - moeA SO0138 0.30 -0.7 144,591 - moeA SO0138 0.35 -0.3 144,651 - moeA SO0138 0.40 -1.4 144,717 - moeA SO0138 0.45 -1.0 144,876 + moeA SO0138 0.58 +0.1 144,876 + moeA SO0138 0.58 +0.7 144,876 + moeA SO0138 0.58 -0.1 144,884 - moeA SO0138 0.58 -0.7 144,900 + moeA SO0138 0.59 +1.1 144,955 + moeA SO0138 0.64 +0.9 144,983 + moeA SO0138 0.66 -0.4 144,991 - moeA SO0138 0.67 -0.1 144,991 - moeA SO0138 0.67 -0.2 144,991 - moeA SO0138 0.67 -0.1 144,991 - moeA SO0138 0.67 +0.4 144,991 - moeA SO0138 0.67 -0.4 145,054 + moeA SO0138 0.72 +0.5 145,054 + moeA SO0138 0.72 +0.8 145,054 + moeA SO0138 0.72 +0.5 145,054 + moeA SO0138 0.72 +0.6 145,060 - moeA SO0138 0.72 -0.1 145,062 - moeA SO0138 0.72 -0.2 145,062 - moeA SO0138 0.72 -0.9 145,112 + moeA SO0138 0.76 -0.4 145,127 - moeA SO0138 0.78 +2.7
Or see this region's nucleotide sequence