Experiment: BG11 with Chloride 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rps12 and rne are separated by 349 nucleotides rne and rhnB overlap by 17 nucleotides rhnB and Synpcc7942_0880 are separated by 22 nucleotides
Synpcc7942_0877: rps12 - Elongator protein 3/MiaB/NifB, at 880,867 to 883,485
rps12
Synpcc7942_0878: rne - ribonuclease, Rne/Rng family, at 883,835 to 886,261
rne
Synpcc7942_0879: rhnB - RNase HII, at 886,245 to 886,892
rhnB
Synpcc7942_0880: Synpcc7942_0880 - hypothetical protein, at 886,915 to 887,472
_0880
Position (kb) 883
884
885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 882.846 kb on - strand at 882.859 kb on - strand, within rps12 at 882.859 kb on - strand, within rps12 at 882.859 kb on - strand, within rps12 at 882.948 kb on + strand, within rps12 at 883.003 kb on - strand, within rps12 at 883.048 kb on + strand, within rps12 at 883.103 kb on - strand, within rps12 at 883.115 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.122 kb on + strand, within rps12 at 883.122 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.143 kb on + strand, within rps12 at 883.143 kb on - strand, within rps12 at 883.143 kb on - strand, within rps12 at 883.151 kb on - strand, within rps12 at 883.203 kb on - strand, within rps12 at 883.211 kb on + strand, within rps12 at 883.212 kb on + strand, within rps12 at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.229 kb on + strand at 883.275 kb on + strand at 883.275 kb on + strand at 883.280 kb on - strand at 883.280 kb on - strand at 883.284 kb on + strand at 883.284 kb on + strand at 883.284 kb on + strand at 883.286 kb on + strand at 883.287 kb on - strand at 883.287 kb on - strand at 883.287 kb on - strand at 883.289 kb on + strand at 883.292 kb on - strand at 883.297 kb on - strand at 883.297 kb on - strand at 883.304 kb on - strand at 883.304 kb on - strand at 883.308 kb on + strand at 883.389 kb on + strand at 883.399 kb on + strand at 883.432 kb on + strand at 883.505 kb on - strand at 883.630 kb on - strand at 883.806 kb on - strand at 883.898 kb on - strand at 883.935 kb on - strand at 883.996 kb on - strand at 885.733 kb on + strand, within rne at 885.757 kb on + strand, within rne at 885.763 kb on + strand, within rne at 885.765 kb on - strand, within rne at 885.771 kb on - strand, within rne at 885.804 kb on + strand, within rne at 885.824 kb on - strand, within rne at 885.849 kb on - strand, within rne at 885.849 kb on - strand, within rne at 885.851 kb on + strand, within rne at 885.883 kb on - strand, within rne at 885.890 kb on - strand, within rne at 885.897 kb on - strand, within rne at 885.902 kb on - strand, within rne at 885.905 kb on + strand, within rne at 885.907 kb on - strand, within rne at 885.962 kb on + strand, within rne at 885.962 kb on + strand, within rne at 885.967 kb on + strand, within rne at 885.986 kb on - strand, within rne at 885.987 kb on + strand, within rne at 885.987 kb on + strand, within rne at 885.997 kb on + strand, within rne at 885.997 kb on + strand, within rne at 885.997 kb on + strand, within rne at 886.005 kb on - strand at 886.005 kb on - strand, within rne at 886.048 kb on - strand at 886.056 kb on + strand at 886.064 kb on - strand at 886.123 kb on + strand at 886.131 kb on - strand at 886.170 kb on - strand at 886.187 kb on + strand at 886.268 kb on - strand at 886.316 kb on + strand, within rhnB at 886.459 kb on - strand, within rhnB at 886.465 kb on + strand, within rhnB at 886.481 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.493 kb on + strand, within rhnB at 886.494 kb on + strand, within rhnB at 886.495 kb on - strand, within rhnB at 886.496 kb on - strand, within rhnB at 886.496 kb on - strand, within rhnB at 886.576 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.660 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.777 kb on - strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.794 kb on - strand, within rhnB at 886.796 kb on - strand, within rhnB at 886.835 kb on - strand at 886.838 kb on + strand at 886.881 kb on + strand at 886.886 kb on + strand at 886.886 kb on + strand at 886.889 kb on - strand at 886.889 kb on - strand at 886.946 kb on + strand at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.032 kb on - strand at 887.032 kb on - strand, within Synpcc7942_0880 at 887.032 kb on - strand, within Synpcc7942_0880 at 887.042 kb on - strand, within Synpcc7942_0880 at 887.048 kb on + strand, within Synpcc7942_0880 at 887.090 kb on + strand, within Synpcc7942_0880 at 887.117 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on - strand, within Synpcc7942_0880 at 887.191 kb on - strand, within Synpcc7942_0880
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 31.25 mM remove 882,846 - +0.6 882,859 - rps12 Synpcc7942_0877 0.76 -2.1 882,859 - rps12 Synpcc7942_0877 0.76 -0.2 882,859 - rps12 Synpcc7942_0877 0.76 +0.6 882,948 + rps12 Synpcc7942_0877 0.79 +1.0 883,003 - rps12 Synpcc7942_0877 0.82 -0.1 883,048 + rps12 Synpcc7942_0877 0.83 +0.6 883,103 - rps12 Synpcc7942_0877 0.85 +0.0 883,115 + rps12 Synpcc7942_0877 0.86 +0.1 883,117 + rps12 Synpcc7942_0877 0.86 -0.9 883,117 + rps12 Synpcc7942_0877 0.86 +2.6 883,117 + rps12 Synpcc7942_0877 0.86 +0.8 883,117 + rps12 Synpcc7942_0877 0.86 +1.4 883,122 + rps12 Synpcc7942_0877 0.86 -1.4 883,122 + rps12 Synpcc7942_0877 0.86 -1.1 883,135 + rps12 Synpcc7942_0877 0.87 +0.2 883,135 + rps12 Synpcc7942_0877 0.87 +0.4 883,135 + rps12 Synpcc7942_0877 0.87 +0.8 883,135 + rps12 Synpcc7942_0877 0.87 +0.3 883,135 + rps12 Synpcc7942_0877 0.87 +0.8 883,143 + rps12 Synpcc7942_0877 0.87 -0.1 883,143 - rps12 Synpcc7942_0877 0.87 -0.2 883,143 - rps12 Synpcc7942_0877 0.87 -2.5 883,151 - rps12 Synpcc7942_0877 0.87 -0.2 883,203 - rps12 Synpcc7942_0877 0.89 +0.2 883,211 + rps12 Synpcc7942_0877 0.89 +0.2 883,212 + rps12 Synpcc7942_0877 0.90 +0.3 883,225 - +0.6 883,225 - -1.2 883,225 - +0.1 883,225 - +0.2 883,225 - +1.5 883,229 + +0.1 883,275 + -1.2 883,275 + +0.1 883,280 - -0.0 883,280 - +1.2 883,284 + -1.2 883,284 + -1.4 883,284 + -0.6 883,286 + -0.4 883,287 - +0.2 883,287 - -0.4 883,287 - +0.9 883,289 + -1.8 883,292 - -0.5 883,297 - -0.2 883,297 - +0.6 883,304 - +0.3 883,304 - +0.2 883,308 + -1.1 883,389 + +0.0 883,399 + +2.0 883,432 + +0.4 883,505 - +0.2 883,630 - -2.1 883,806 - -1.7 883,898 - +0.6 883,935 - +0.6 883,996 - +0.1 885,733 + rne Synpcc7942_0878 0.78 -2.9 885,757 + rne Synpcc7942_0878 0.79 -3.4 885,763 + rne Synpcc7942_0878 0.79 -0.4 885,765 - rne Synpcc7942_0878 0.80 -0.0 885,771 - rne Synpcc7942_0878 0.80 -0.8 885,804 + rne Synpcc7942_0878 0.81 +0.6 885,824 - rne Synpcc7942_0878 0.82 -2.1 885,849 - rne Synpcc7942_0878 0.83 -2.2 885,849 - rne Synpcc7942_0878 0.83 -0.8 885,851 + rne Synpcc7942_0878 0.83 -2.0 885,883 - rne Synpcc7942_0878 0.84 -0.7 885,890 - rne Synpcc7942_0878 0.85 -1.3 885,897 - rne Synpcc7942_0878 0.85 -2.1 885,902 - rne Synpcc7942_0878 0.85 -1.6 885,905 + rne Synpcc7942_0878 0.85 -0.8 885,907 - rne Synpcc7942_0878 0.85 -1.1 885,962 + rne Synpcc7942_0878 0.88 -1.3 885,962 + rne Synpcc7942_0878 0.88 -1.1 885,967 + rne Synpcc7942_0878 0.88 -0.5 885,986 - rne Synpcc7942_0878 0.89 -1.0 885,987 + rne Synpcc7942_0878 0.89 -1.0 885,987 + rne Synpcc7942_0878 0.89 +0.7 885,997 + rne Synpcc7942_0878 0.89 -1.8 885,997 + rne Synpcc7942_0878 0.89 -2.4 885,997 + rne Synpcc7942_0878 0.89 -0.8 886,005 - +2.6 886,005 - rne Synpcc7942_0878 0.89 +0.6 886,048 - +2.0 886,056 + -0.4 886,064 - +0.2 886,123 + +0.2 886,131 - -0.6 886,170 - +0.9 886,187 + +1.6 886,268 - +1.7 886,316 + rhnB Synpcc7942_0879 0.11 -2.7 886,459 - rhnB Synpcc7942_0879 0.33 -2.1 886,465 + rhnB Synpcc7942_0879 0.34 -0.1 886,481 + rhnB Synpcc7942_0879 0.36 -0.7 886,488 + rhnB Synpcc7942_0879 0.38 -1.0 886,488 + rhnB Synpcc7942_0879 0.38 -0.3 886,488 + rhnB Synpcc7942_0879 0.38 +0.5 886,488 + rhnB Synpcc7942_0879 0.38 +0.3 886,493 + rhnB Synpcc7942_0879 0.38 +0.3 886,494 + rhnB Synpcc7942_0879 0.38 -0.0 886,495 - rhnB Synpcc7942_0879 0.39 -1.2 886,496 - rhnB Synpcc7942_0879 0.39 +0.9 886,496 - rhnB Synpcc7942_0879 0.39 -0.0 886,576 - rhnB Synpcc7942_0879 0.51 +0.8 886,591 - rhnB Synpcc7942_0879 0.53 -0.9 886,591 - rhnB Synpcc7942_0879 0.53 -1.3 886,660 - rhnB Synpcc7942_0879 0.64 -1.6 886,714 - rhnB Synpcc7942_0879 0.72 -0.1 886,714 - rhnB Synpcc7942_0879 0.72 -1.2 886,777 - rhnB Synpcc7942_0879 0.82 +0.5 886,788 + rhnB Synpcc7942_0879 0.84 +0.8 886,788 + rhnB Synpcc7942_0879 0.84 +0.3 886,788 + rhnB Synpcc7942_0879 0.84 +0.2 886,794 - rhnB Synpcc7942_0879 0.85 -0.6 886,796 - rhnB Synpcc7942_0879 0.85 -1.9 886,835 - -3.0 886,838 + -0.0 886,881 + -1.8 886,886 + +1.8 886,886 + -1.7 886,889 - -2.4 886,889 - -0.2 886,946 + -1.5 887,024 + Synpcc7942_0880 0.20 +0.6 887,024 + Synpcc7942_0880 0.20 -0.5 887,024 + Synpcc7942_0880 0.20 -0.2 887,032 - +3.2 887,032 - Synpcc7942_0880 0.21 -1.4 887,032 - Synpcc7942_0880 0.21 +1.2 887,042 - Synpcc7942_0880 0.23 -0.9 887,048 + Synpcc7942_0880 0.24 -2.7 887,090 + Synpcc7942_0880 0.31 -1.4 887,117 + Synpcc7942_0880 0.36 -1.9 887,123 + Synpcc7942_0880 0.37 -0.9 887,123 + Synpcc7942_0880 0.37 -2.2 887,123 + Synpcc7942_0880 0.37 -1.3 887,123 - Synpcc7942_0880 0.37 -0.8 887,191 - Synpcc7942_0880 0.49 -0.3
Or see this region's nucleotide sequence