Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37350

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,858,414	+		RR42_RS37345	0.11	-0.1
3,858,414	+		RR42_RS37345	0.11	-0.7
3,858,414	+		RR42_RS37345	0.11	+0.3
3,858,415	-		RR42_RS37345	0.11	+0.1
3,858,415	-		RR42_RS37345	0.11	-1.5
3,858,415	-		RR42_RS37345	0.11	-0.4
3,858,435	+		RR42_RS37345	0.14	-0.3
3,858,436	-		RR42_RS37345	0.14	+0.1
3,858,568	+		RR42_RS37345	0.31	+0.1
3,858,568	+		RR42_RS37345	0.31	-0.7
3,858,568	+		RR42_RS37345	0.31	+1.3
3,858,568	+		RR42_RS37345	0.31	-1.4
3,858,569	-		RR42_RS37345	0.31	+0.6
3,858,569	-		RR42_RS37345	0.31	+0.3
3,858,600	+		RR42_RS37345	0.35	-0.1
3,858,601	-		RR42_RS37345	0.36	-0.6
3,858,601	-		RR42_RS37345	0.36	+0.4
3,858,705	+		RR42_RS37345	0.49	-3.0
3,858,705	+		RR42_RS37345	0.49	+0.9
3,858,705	+		RR42_RS37345	0.49	-0.2
3,858,706	-		RR42_RS37345	0.49	-0.8
3,858,706	-		RR42_RS37345	0.49	-0.7
3,858,706	-		RR42_RS37345	0.49	-0.5
3,858,706	-		RR42_RS37345	0.49	-0.5
3,858,706	-		RR42_RS37345	0.49	-0.7
3,858,727	+		RR42_RS37345	0.52	-0.3
3,858,727	+		RR42_RS37345	0.52	-3.2
3,858,882	+		RR42_RS37345	0.72	-0.4
3,858,882	+		RR42_RS37345	0.72	-0.3
3,858,882	+		RR42_RS37345	0.72	-1.0
3,858,882	+		RR42_RS37345	0.72	+0.6
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+		RR42_RS37345	0.72	-3.2
3,858,882	+				+0.9
3,858,882	+		RR42_RS37345	0.72	-1.7
3,858,882	+		RR42_RS37345	0.72	-1.1
3,858,882	+		RR42_RS37345	0.72	-1.8
3,858,882	+		RR42_RS37345	0.72	-2.8
3,858,882	+		RR42_RS37345	0.72	+1.4
3,858,882	+		RR42_RS37345	0.72	-0.3
3,858,882	+		RR42_RS37345	0.72	-0.8
3,858,882	+		RR42_RS37345	0.72	-0.2
3,858,883	-		RR42_RS37345	0.72	+0.5
3,858,883	-		RR42_RS37345	0.72	-0.1
3,858,883	-		RR42_RS37345	0.72	+0.2
3,858,883	-		RR42_RS37345	0.72	+0.2
3,858,883	-		RR42_RS37345	0.72	+0.9
3,858,883	-		RR42_RS37345	0.72	+0.6
3,858,883	-				-0.3
3,858,883	-		RR42_RS37345	0.72	-1.3
3,859,002	-		RR42_RS37345	0.87	-0.7
3,859,002	-		RR42_RS37345	0.87	-0.7
3,859,117	+				-1.9
3,859,117	+				+1.5
3,859,117	+				-2.4
3,859,118	-				-0.4
3,859,118	-				-0.9
3,859,177	+		RR42_RS37350	0.12	-0.2
3,859,177	+		RR42_RS37350	0.12	-0.3
3,859,177	+		RR42_RS37350	0.12	-0.5
3,859,177	+		RR42_RS37350	0.12	-0.2
3,859,199	-		RR42_RS37350	0.15	-0.5
3,859,625	-		RR42_RS37350	0.78	+0.2
3,859,712	+				+0.0
3,859,712	+				+1.1
3,859,940	+		RR42_RS37355	0.23	+0.6
3,859,940	+		RR42_RS37355	0.23	+1.3
3,860,206	+		RR42_RS37355	0.81	-0.9
3,860,206	+		RR42_RS37355	0.81	-1.3
3,860,207	-		RR42_RS37355	0.81	-0.1
3,860,207	-		RR42_RS37355	0.81	+0.9
3,860,230	+				+1.3
3,860,230	+		RR42_RS37355	0.86	+1.3
3,860,231	-		RR42_RS37355	0.86	-0.5
3,860,231	-		RR42_RS37355	0.86	+1.4
3,860,231	-		RR42_RS37355	0.86	-1.6
3,860,231	-		RR42_RS37355	0.86	-0.5
3,860,231	-		RR42_RS37355	0.86	-0.3
3,860,270	+				-0.6
3,860,270	+				+0.4
3,860,271	-				+1.9
3,860,271	-				-0.6
3,860,271	-				-0.6
3,860,271	-				-3.2
3,860,308	+				-1.4
3,860,316	+				-2.4
3,860,316	+				-0.7
3,860,325	+				-0.8
3,860,326	-				-0.2
3,860,334	+				-1.7
3,860,335	-				+0.1
3,860,401	+				-1.3
3,860,401	+				+1.0
3,860,401	+				-0.8
3,860,401	+				+1.3
3,860,402	-				-0.2
3,860,402	-				+2.6
3,860,521	+				-1.5
3,860,521	+				+0.3
3,860,522	-				+0.1
3,860,558	+				-0.3
3,860,571	+				+0.1
3,860,571	+				-0.5
3,860,580	+				+0.7
3,860,580	+				-0.4
3,860,580	+				+0.1
3,860,581	-				-1.5
3,860,581	-				-1.0
3,860,581	-				-0.3
3,860,585	+				+0.5
3,860,593	+				-1.1
3,860,594	-				-2.3
3,860,594	-				+0.5
3,860,599	-				+0.8
3,860,599	-				-1.1
3,860,646	+				+0.3
3,860,646	+				-0.3
3,860,647	-				-0.0
3,860,667	+				-1.0
3,860,667	+				-0.0
3,860,667	+				+0.3
3,860,667	+				-1.1
3,860,667	+				-0.6
3,860,668	-				+1.3
3,860,688	+				-1.1
3,860,714	+				+0.9
3,860,754	+				-1.6