Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37345

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,857,331	-		RR42_RS37340	0.58	+0.5
3,857,331	-		RR42_RS37340	0.58	-0.8
3,857,369	-		RR42_RS37340	0.60	-0.1
3,857,443	+		RR42_RS37340	0.64	-1.8
3,857,443	+		RR42_RS37340	0.64	-1.9
3,857,443	+		RR42_RS37340	0.64	-0.3
3,857,444	-		RR42_RS37340	0.64	-0.3
3,857,444	-		RR42_RS37340	0.64	-0.6
3,857,444	-		RR42_RS37340	0.64	-2.7
3,857,551	+		RR42_RS37340	0.69	-1.9
3,857,551	+		RR42_RS37340	0.69	-2.0
3,857,551	+		RR42_RS37340	0.69	-1.2
3,857,551	+		RR42_RS37340	0.69	-0.4
3,857,551	+		RR42_RS37340	0.69	-0.0
3,857,552	-		RR42_RS37340	0.69	-1.3
3,857,552	-				-1.0
3,857,552	-		RR42_RS37340	0.69	-1.2
3,857,552	-		RR42_RS37340	0.69	-1.4
3,857,552	-		RR42_RS37340	0.69	+1.0
3,857,552	-		RR42_RS37340	0.69	+0.7
3,857,689	+		RR42_RS37340	0.75	-2.0
3,857,689	+		RR42_RS37340	0.75	+0.3
3,857,690	-		RR42_RS37340	0.75	-2.0
3,857,737	-		RR42_RS37340	0.77	-0.2
3,857,770	+		RR42_RS37340	0.79	+1.2
3,857,771	-		RR42_RS37340	0.79	-0.1
3,857,771	-		RR42_RS37340	0.79	+0.2
3,857,786	+		RR42_RS37340	0.79	+0.4
3,857,786	+		RR42_RS37340	0.79	-2.7
3,857,787	-		RR42_RS37340	0.79	-0.8
3,857,863	+		RR42_RS37340	0.83	-1.2
3,857,864	-		RR42_RS37340	0.83	+0.1
3,857,890	+		RR42_RS37340	0.84	-0.9
3,857,971	+		RR42_RS37340	0.88	-1.0
3,857,971	+		RR42_RS37340	0.88	-1.0
3,857,971	+		RR42_RS37340	0.88	-0.6
3,857,971	+		RR42_RS37340	0.88	-0.1
3,857,972	-		RR42_RS37340	0.88	-1.7
3,857,972	-		RR42_RS37340	0.88	+0.6
3,857,972	-				-0.3
3,857,975	+		RR42_RS37340	0.88	+1.2
3,857,975	+		RR42_RS37340	0.88	+0.6
3,857,975	+		RR42_RS37340	0.88	-0.5
3,857,975	+		RR42_RS37340	0.88	-2.0
3,857,975	+		RR42_RS37340	0.88	-2.8
3,857,975	+		RR42_RS37340	0.88	-1.6
3,857,975	+		RR42_RS37340	0.88	-0.7
3,857,975	+		RR42_RS37340	0.88	-2.5
3,857,975	+		RR42_RS37340	0.88	+0.5
3,857,976	-		RR42_RS37340	0.88	-1.0
3,857,976	-		RR42_RS37340	0.88	-2.3
3,857,976	-		RR42_RS37340	0.88	-0.6
3,857,976	-		RR42_RS37340	0.88	-3.0
3,857,976	-		RR42_RS37340	0.88	-1.2
3,857,976	-		RR42_RS37340	0.88	+0.3
3,857,976	-		RR42_RS37340	0.88	-1.5
3,857,976	-		RR42_RS37340	0.88	+0.5
3,857,976	-		RR42_RS37340	0.88	-2.9
3,857,976	-		RR42_RS37340	0.88	-0.2
3,857,977	+		RR42_RS37340	0.88	-1.0
3,857,977	+		RR42_RS37340	0.88	-1.3
3,857,978	-		RR42_RS37340	0.88	-1.9
3,857,978	-		RR42_RS37340	0.88	-2.6
3,857,978	-		RR42_RS37340	0.88	+0.6
3,857,978	-		RR42_RS37340	0.88	+0.2
3,857,978	-		RR42_RS37340	0.88	+0.6
3,858,414	+		RR42_RS37345	0.11	-0.1
3,858,414	+		RR42_RS37345	0.11	-0.7
3,858,414	+		RR42_RS37345	0.11	+0.3
3,858,415	-		RR42_RS37345	0.11	+0.1
3,858,415	-		RR42_RS37345	0.11	-1.5
3,858,415	-		RR42_RS37345	0.11	-0.4
3,858,435	+		RR42_RS37345	0.14	-0.3
3,858,436	-		RR42_RS37345	0.14	+0.1
3,858,568	+		RR42_RS37345	0.31	+0.1
3,858,568	+		RR42_RS37345	0.31	-0.7
3,858,568	+		RR42_RS37345	0.31	+1.3
3,858,568	+		RR42_RS37345	0.31	-1.4
3,858,569	-		RR42_RS37345	0.31	+0.6
3,858,569	-		RR42_RS37345	0.31	+0.3
3,858,600	+		RR42_RS37345	0.35	-0.1
3,858,601	-		RR42_RS37345	0.36	-0.6
3,858,601	-		RR42_RS37345	0.36	+0.4
3,858,705	+		RR42_RS37345	0.49	-3.0
3,858,705	+		RR42_RS37345	0.49	+0.9
3,858,705	+		RR42_RS37345	0.49	-0.2
3,858,706	-		RR42_RS37345	0.49	-0.8
3,858,706	-		RR42_RS37345	0.49	-0.7
3,858,706	-		RR42_RS37345	0.49	-0.5
3,858,706	-		RR42_RS37345	0.49	-0.5
3,858,706	-		RR42_RS37345	0.49	-0.7
3,858,727	+		RR42_RS37345	0.52	-0.3
3,858,727	+		RR42_RS37345	0.52	-3.2
3,858,882	+		RR42_RS37345	0.72	-0.4
3,858,882	+		RR42_RS37345	0.72	-0.3
3,858,882	+		RR42_RS37345	0.72	-1.0
3,858,882	+		RR42_RS37345	0.72	+0.6
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+		RR42_RS37345	0.72	+0.1
3,858,882	+		RR42_RS37345	0.72	-3.2
3,858,882	+				+0.9
3,858,882	+		RR42_RS37345	0.72	-1.7
3,858,882	+		RR42_RS37345	0.72	-1.1
3,858,882	+		RR42_RS37345	0.72	-1.8
3,858,882	+		RR42_RS37345	0.72	-2.8
3,858,882	+		RR42_RS37345	0.72	+1.4
3,858,882	+		RR42_RS37345	0.72	-0.3
3,858,882	+		RR42_RS37345	0.72	-0.8
3,858,882	+		RR42_RS37345	0.72	-0.2
3,858,883	-		RR42_RS37345	0.72	+0.5
3,858,883	-		RR42_RS37345	0.72	-0.1
3,858,883	-		RR42_RS37345	0.72	+0.2
3,858,883	-		RR42_RS37345	0.72	+0.2
3,858,883	-		RR42_RS37345	0.72	+0.9
3,858,883	-		RR42_RS37345	0.72	+0.6
3,858,883	-				-0.3
3,858,883	-		RR42_RS37345	0.72	-1.3
3,859,002	-		RR42_RS37345	0.87	-0.7
3,859,002	-		RR42_RS37345	0.87	-0.7
3,859,117	+				-1.9
3,859,117	+				+1.5
3,859,117	+				-2.4
3,859,118	-				-0.4
3,859,118	-				-0.9
3,859,177	+		RR42_RS37350	0.12	-0.2
3,859,177	+		RR42_RS37350	0.12	-0.3
3,859,177	+		RR42_RS37350	0.12	-0.5
3,859,177	+		RR42_RS37350	0.12	-0.2
3,859,199	-		RR42_RS37350	0.15	-0.5
3,859,625	-		RR42_RS37350	0.78	+0.2
3,859,712	+				+0.0
3,859,712	+				+1.1
3,859,940	+		RR42_RS37355	0.23	+0.6
3,859,940	+		RR42_RS37355	0.23	+1.3