Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37235

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,817,031	-				-0.2
3,817,031	-				+0.1
3,817,031	-				+1.3
3,817,031	-				+0.8
3,817,051	+				+0.4
3,817,069	-				+1.0
3,817,070	-				+1.1
3,817,139	+				-3.0
3,817,139	+				+0.8
3,817,166	-		RR42_RS37225	0.16	+0.7
3,817,185	-		RR42_RS37225	0.24	-0.1
3,817,209	+		RR42_RS37225	0.33	-0.5
3,817,209	+		RR42_RS37225	0.33	+1.2
3,817,276	+		RR42_RS37225	0.58	-2.9
3,817,284	+		RR42_RS37225	0.61	-0.2
3,817,284	+		RR42_RS37225	0.61	+0.0
3,817,284	+		RR42_RS37225	0.61	+2.9
3,817,284	+		RR42_RS37225	0.61	-0.8
3,817,285	-		RR42_RS37225	0.61	+1.3
3,817,288	-		RR42_RS37225	0.62	-0.1
3,817,288	-		RR42_RS37225	0.62	+1.8
3,817,303	+		RR42_RS37225	0.68	-0.3
3,817,304	-		RR42_RS37225	0.68	-0.7
3,817,375	+				+0.3
3,817,375	+				+0.1
3,817,376	-				+2.1
3,817,376	-				-2.9
3,817,376	-				+1.0
3,817,381	+				+0.2
3,817,381	+				+1.0
3,817,381	+				+0.2
3,817,381	+				+0.5
3,817,382	-				+1.4
3,817,382	-				+0.3
3,817,386	+				-0.9
3,817,431	+				+1.1
3,817,431	+				+0.9
3,817,431	+				-1.7
3,817,432	-				-0.1
3,817,500	+				-0.5
3,817,501	-				+1.3
3,817,501	-				-0.9
3,817,524	+				-0.3
3,817,570	+				+1.4
3,817,571	-				-0.6
3,817,642	+				+0.6
3,817,643	-				+0.0
3,817,643	-				-1.3
3,817,643	-				-0.7
3,817,675	+				+0.5
3,817,676	-				-1.7
3,817,676	-				-0.2
3,817,691	-				+0.2
3,817,691	-				-0.5
3,817,691	-				+0.1
3,817,739	+		RR42_RS37230	0.15	-0.5
3,817,739	+		RR42_RS37230	0.15	-0.2
3,817,740	-		RR42_RS37230	0.15	-2.4
3,817,740	-		RR42_RS37230	0.15	+0.7
3,817,811	+		RR42_RS37230	0.46	+0.1
3,817,812	-		RR42_RS37230	0.46	+0.3
3,817,812	-		RR42_RS37230	0.46	+1.3
3,817,816	-		RR42_RS37230	0.48	+0.6
3,817,837	+		RR42_RS37230	0.57	-2.3
3,817,837	+		RR42_RS37230	0.57	-0.9
3,817,838	-		RR42_RS37230	0.58	-0.5
3,817,838	-		RR42_RS37230	0.58	+0.3
3,817,859	+		RR42_RS37230	0.67	-0.2
3,817,860	-		RR42_RS37230	0.67	-0.3
3,817,870	+		RR42_RS37230	0.71	-0.5
3,817,889	-		RR42_RS37230	0.80	-0.6
3,817,889	-		RR42_RS37230	0.80	+2.7
3,817,922	-				-0.3
3,817,931	-				+0.1
3,817,931	-				-0.3
3,817,935	+				+3.0
3,817,936	-				-0.1
3,817,936	-				+0.7
3,817,936	-				+1.3
3,817,936	-				-0.7
3,817,938	+				-0.1
3,817,939	-				+0.9
3,817,939	-				+1.0
3,817,939	-				-1.3
3,817,939	-				-1.5
3,818,044	+				+0.6
3,818,115	+		RR42_RS37235	0.33	-2.5
3,818,116	-		RR42_RS37235	0.34	+1.0
3,818,116	-		RR42_RS37235	0.34	-1.5
3,818,224	+		RR42_RS37235	0.77	+0.0
3,818,224	+		RR42_RS37235	0.77	-0.3
3,818,224	+		RR42_RS37235	0.77	+0.2
3,818,224	+		RR42_RS37235	0.77	-2.5
3,818,225	-		RR42_RS37235	0.77	-2.3
3,818,225	-		RR42_RS37235	0.77	-0.4
3,818,225	-		RR42_RS37235	0.77	-0.8
3,818,227	+		RR42_RS37235	0.78	-3.7
3,818,228	-		RR42_RS37235	0.78	+0.6
3,818,254	+		RR42_RS37235	0.88	+0.1
3,818,254	+		RR42_RS37235	0.88	+1.4
3,818,255	-		RR42_RS37235	0.89	+0.7
3,818,255	-		RR42_RS37235	0.89	-0.6
3,818,255	-		RR42_RS37235	0.89	+0.4
3,818,265	-				+0.1
3,818,336	+				+0.3
3,818,419	-				+1.0
3,818,482	-				-0.3
3,818,482	-				-0.4
3,818,538	-				-2.5
3,818,545	+				-0.3
3,818,610	-				+0.6
3,818,723	+				+0.1
3,818,763	-				-0.7
3,818,776	+				-1.3
3,818,776	+				+0.2
3,818,776	+				-0.5
3,818,776	+				-1.0
3,818,777	-				-1.3
3,818,777	-				-1.4
3,818,777	-				-0.8
3,818,779	+				+0.7
3,818,926	+				+1.7
3,818,926	+				+0.1
3,818,926	+				+0.3
3,818,926	+				-1.7
3,818,926	+				-1.4
3,818,927	-				+1.9
3,818,984	+				-3.4
3,818,985	-				+1.3
3,819,032	+				-0.4
3,819,033	-				+0.6
3,819,043	-				-0.1
3,819,073	+				+1.4
3,819,238	-		RR42_RS37240	0.40	-1.6