Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36225

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,575,801	+		RR42_RS36220	0.12	-0.0
3,575,828	+		RR42_RS36220	0.15	-0.2
3,575,828	+		RR42_RS36220	0.15	+0.8
3,575,829	-		RR42_RS36220	0.15	-1.2
3,575,852	+		RR42_RS36220	0.17	+0.4
3,575,852	+		RR42_RS36220	0.17	+0.3
3,575,852	+		RR42_RS36220	0.17	-0.1
3,575,853	-		RR42_RS36220	0.17	-0.6
3,575,853	-		RR42_RS36220	0.17	+0.6
3,575,861	+		RR42_RS36220	0.18	-0.3
3,575,862	-		RR42_RS36220	0.18	-0.5
3,575,951	+		RR42_RS36220	0.27	-0.7
3,575,952	-		RR42_RS36220	0.27	-0.5
3,576,140	+		RR42_RS36220	0.46	-0.5
3,576,140	+		RR42_RS36220	0.46	-1.0
3,576,140	+		RR42_RS36220	0.46	-0.6
3,576,140	+		RR42_RS36220	0.46	+1.5
3,576,140	+		RR42_RS36220	0.46	-1.5
3,576,140	+		RR42_RS36220	0.46	+0.4
3,576,140	+		RR42_RS36220	0.46	-0.4
3,576,141	-		RR42_RS36220	0.46	-1.0
3,576,141	-		RR42_RS36220	0.46	-2.0
3,576,171	-		RR42_RS36220	0.49	+1.3
3,576,224	+		RR42_RS36220	0.55	+0.9
3,576,224	+		RR42_RS36220	0.55	-0.4
3,576,224	+		RR42_RS36220	0.55	+1.3
3,576,225	-		RR42_RS36220	0.55	+0.1
3,576,225	-		RR42_RS36220	0.55	-0.6
3,576,225	-		RR42_RS36220	0.55	+1.6
3,576,404	+		RR42_RS36220	0.73	-1.6
3,576,503	+		RR42_RS36220	0.83	+0.1
3,576,503	+		RR42_RS36220	0.83	+0.1
3,576,504	-		RR42_RS36220	0.83	+0.1
3,576,504	-		RR42_RS36220	0.83	+0.5
3,576,504	-		RR42_RS36220	0.83	+1.8
3,576,636	-				-1.9
3,576,636	-				+0.7
3,576,636	-				-0.4
3,576,710	+				+0.1
3,576,711	-				-2.8
3,576,711	-				+0.4
3,576,718	+				+0.8
3,576,718	+				-1.2
3,576,766	-				+0.4
3,576,766	-				-0.3
3,576,766	-				+0.8
3,576,964	-		RR42_RS36225	0.23	+0.0
3,576,964	-		RR42_RS36225	0.23	+0.4
3,577,041	+		RR42_RS36225	0.30	-0.6
3,577,041	+		RR42_RS36225	0.30	+1.0
3,577,042	-		RR42_RS36225	0.30	-3.4
3,577,059	+		RR42_RS36225	0.32	+1.3
3,577,059	+		RR42_RS36225	0.32	-1.1
3,577,060	-		RR42_RS36225	0.32	-0.7
3,577,060	-		RR42_RS36225	0.32	+0.9
3,577,060	-		RR42_RS36225	0.32	-0.0
3,577,065	+		RR42_RS36225	0.33	-0.2
3,577,272	+		RR42_RS36225	0.53	+0.7
3,577,273	-		RR42_RS36225	0.53	+0.6
3,577,273	-		RR42_RS36225	0.53	-1.7
3,577,385	+		RR42_RS36225	0.63	+0.7
3,577,386	-		RR42_RS36225	0.64	-0.3
3,577,434	+		RR42_RS36225	0.68	-0.8
3,577,435	-		RR42_RS36225	0.68	+0.7
3,577,464	+		RR42_RS36225	0.71	-1.5
3,577,618	-		RR42_RS36225	0.86	+0.4
3,577,618	-		RR42_RS36225	0.86	-2.0
3,577,830	+				-0.4
3,577,830	+				-1.3
3,578,104	-		RR42_RS36230	0.17	+0.8
3,578,104	-		RR42_RS36230	0.17	-2.6
3,578,104	-		RR42_RS36230	0.17	-1.1
3,578,527	+		RR42_RS36230	0.73	+0.7
3,578,527	+		RR42_RS36230	0.73	+0.1
3,578,527	+		RR42_RS36230	0.73	+1.0
3,578,528	-		RR42_RS36230	0.74	+0.2
3,578,528	-		RR42_RS36230	0.74	+1.0
3,578,528	-		RR42_RS36230	0.74	-0.6
3,578,528	-		RR42_RS36230	0.74	-1.7
3,578,540	-		RR42_RS36230	0.75	-0.6
3,578,659	+				+0.3
3,578,722	+				-1.9
3,578,722	+				+0.8