Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33500

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,930,584	+		RR42_RS33495	0.46	-0.3
2,930,584	+		RR42_RS33495	0.46	+1.7
2,930,585	-		RR42_RS33495	0.46	-0.3
2,930,585	-		RR42_RS33495	0.46	+1.1
2,930,585	-		RR42_RS33495	0.46	+0.3
2,930,603	-		RR42_RS33495	0.48	-1.6
2,930,812	+		RR42_RS33495	0.63	-0.1
2,930,957	+		RR42_RS33495	0.73	+1.1
2,930,972	-		RR42_RS33495	0.74	+1.0
2,930,980	+		RR42_RS33495	0.75	+0.4
2,930,980	+		RR42_RS33495	0.75	+0.5
2,930,980	+		RR42_RS33495	0.75	+0.5
2,930,980	+		RR42_RS33495	0.75	+1.1
2,930,980	+		RR42_RS33495	0.75	+1.0
2,930,980	+		RR42_RS33495	0.75	+0.8
2,930,980	+		RR42_RS33495	0.75	+0.8
2,930,980	+		RR42_RS33495	0.75	+0.2
2,930,981	-		RR42_RS33495	0.75	+0.2
2,930,981	-		RR42_RS33495	0.75	+1.5
2,930,981	-		RR42_RS33495	0.75	+0.3
2,930,981	-		RR42_RS33495	0.75	-1.4
2,930,981	-		RR42_RS33495	0.75	-1.1
2,930,981	-		RR42_RS33495	0.75	-0.1
2,930,981	-		RR42_RS33495	0.75	+0.3
2,930,981	-		RR42_RS33495	0.75	+0.1
2,930,981	-		RR42_RS33495	0.75	+0.3
2,930,981	-		RR42_RS33495	0.75	-0.1
2,930,981	-		RR42_RS33495	0.75	-0.3
2,930,981	-		RR42_RS33495	0.75	-0.3
2,930,981	-		RR42_RS33495	0.75	+0.0
2,930,981	-		RR42_RS33495	0.75	-0.4
2,930,981	-		RR42_RS33495	0.75	+1.2
2,931,020	+		RR42_RS33495	0.77	-2.1
2,931,022	+		RR42_RS33495	0.78	+2.7
2,931,022	+		RR42_RS33495	0.78	-0.3
2,931,022	+		RR42_RS33495	0.78	+0.3
2,931,022	+		RR42_RS33495	0.78	-1.5
2,931,022	+		RR42_RS33495	0.78	+0.6
2,931,022	+		RR42_RS33495	0.78	+0.9
2,931,022	+		RR42_RS33495	0.78	+1.7
2,931,023	-		RR42_RS33495	0.78	-0.6
2,931,023	-		RR42_RS33495	0.78	-0.2
2,931,034	+		RR42_RS33495	0.78	-1.4
2,931,034	+		RR42_RS33495	0.78	+0.2
2,931,073	+		RR42_RS33495	0.81	+0.3
2,931,073	+		RR42_RS33495	0.81	+0.3
2,931,073	+		RR42_RS33495	0.81	+1.2
2,931,074	-		RR42_RS33495	0.81	-0.1
2,931,312	-				+0.7
2,931,312	-				+0.0
2,931,347	+				+1.3
2,931,456	-				-0.4
2,931,738	+		RR42_RS33500	0.24	+3.1
2,931,741	+		RR42_RS33500	0.24	+2.0
2,931,741	+		RR42_RS33500	0.24	+2.7
2,931,741	+		RR42_RS33500	0.24	+2.1
2,931,742	-		RR42_RS33500	0.24	-0.6
2,931,742	-		RR42_RS33500	0.24	+0.2
2,931,744	+		RR42_RS33500	0.25	+4.9
2,931,745	-		RR42_RS33500	0.25	+0.3
2,932,033	-		RR42_RS33500	0.52	-0.5
2,932,140	+		RR42_RS33500	0.62	+3.2
2,932,140	+		RR42_RS33500	0.62	+4.5
2,932,140	+		RR42_RS33500	0.62	+3.1
2,932,140	+		RR42_RS33500	0.62	+1.6
2,932,141	-		RR42_RS33500	0.62	+0.8
2,932,141	-		RR42_RS33500	0.62	+0.7
2,932,141	-		RR42_RS33500	0.62	+0.3
2,932,141	-		RR42_RS33500	0.62	-1.0
2,932,177	-		RR42_RS33500	0.65	+0.6
2,932,278	+		RR42_RS33500	0.74	+3.5
2,932,278	+		RR42_RS33500	0.74	+3.1
2,932,278	+		RR42_RS33500	0.74	+4.3
2,932,278	+		RR42_RS33500	0.74	+3.9
2,932,279	-		RR42_RS33500	0.74	-0.9
2,932,279	-		RR42_RS33500	0.74	-0.3
2,932,348	-		RR42_RS33500	0.81	+1.1
2,932,475	+				+4.4
2,932,476	-				+0.1
2,932,476	-				+0.5
2,932,476	-				-2.9
2,932,588	+				+4.4
2,932,588	+				+3.8
2,932,588	+				+4.4
2,932,588	+				+2.8
2,932,589	-				+1.4
2,932,589	-				+1.2
2,932,589	-				+1.2
2,932,591	+				+3.7
2,932,592	-				+0.8
2,932,592	-				+0.6
2,932,658	+				+3.5
2,932,674	+				+4.1
2,932,674	+				+4.3
2,932,674	+				+4.2
2,932,691	+				+3.9
2,932,691	+				+4.1
2,932,691	+				+4.0
2,932,692	-				+0.1
2,932,692	-				-2.0
2,932,693	+				+3.6
2,932,693	+				+4.1
2,932,694	-				-0.7
2,932,694	-				-0.2
2,932,804	+				-2.1
2,932,950	+		RR42_RS33505	0.34	-0.5
2,933,000	+		RR42_RS33505	0.45	-1.7
2,933,000	+		RR42_RS33505	0.45	-1.5
2,933,001	-		RR42_RS33505	0.45	+0.1
2,933,001	-		RR42_RS33505	0.45	+0.2
2,933,112	+		RR42_RS33505	0.68	-0.9
2,933,112	+		RR42_RS33505	0.68	-2.4
2,933,113	-		RR42_RS33505	0.69	-2.1
2,933,113	-		RR42_RS33505	0.69	-1.7
2,933,113	-		RR42_RS33505	0.69	-1.0
2,933,113	-		RR42_RS33505	0.69	+0.7
2,933,365	+				-2.3
2,933,365	+				-3.3
2,933,419	+				-2.2
2,933,420	-				-3.9
2,933,420	-				-4.6