Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33085

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,827,926	-		RR42_RS33080	0.78	+1.3
2,828,134	-				-1.1
2,828,321	-				+1.4
2,828,461	+				-1.2
2,828,462	-				+0.5
2,828,462	-				-2.3
2,828,519	-				+1.5
2,828,519	-				-2.1
2,828,524	+				-0.5
2,828,524	+				+0.5
2,828,524	+				+0.0
2,828,525	-				+0.0
2,828,530	+				+0.8
2,828,530	+				+0.6
2,828,530	+				+1.0
2,828,531	-				-0.4
2,828,609	+				-0.5
2,828,610	-				+0.5
2,828,610	-				-0.3
2,828,610	-				+0.7
2,828,610	-				+2.0
2,828,611	+				+0.3
2,828,753	-				+0.5
2,828,887	+				-0.4
2,828,888	-				-0.8
2,828,888	-				+0.9
2,828,913	+				+1.0
2,829,141	-		RR42_RS33085	0.20	+0.6
2,829,178	+		RR42_RS33085	0.22	+0.7
2,829,178	+		RR42_RS33085	0.22	-2.0
2,829,179	-		RR42_RS33085	0.22	-0.3
2,829,280	+		RR42_RS33085	0.26	+0.0
2,829,280	+		RR42_RS33085	0.26	-1.5
2,829,386	-		RR42_RS33085	0.31	-0.5
2,829,457	+		RR42_RS33085	0.34	-1.7
2,829,457	+		RR42_RS33085	0.34	-2.1
2,829,457	+		RR42_RS33085	0.34	+1.2
2,829,457	+		RR42_RS33085	0.34	+1.0
2,829,460	+		RR42_RS33085	0.34	-0.8
2,829,461	-		RR42_RS33085	0.34	+0.8
2,829,461	-		RR42_RS33085	0.34	+0.8
2,829,475	+		RR42_RS33085	0.35	+1.5
2,829,475	+		RR42_RS33085	0.35	-0.5
2,829,476	-		RR42_RS33085	0.35	+0.5
2,829,476	-		RR42_RS33085	0.35	-0.1
2,829,476	-		RR42_RS33085	0.35	+0.3
2,829,560	-		RR42_RS33085	0.39	+0.7
2,829,685	+		RR42_RS33085	0.44	+1.8
2,829,685	+		RR42_RS33085	0.44	+0.8
2,829,686	-		RR42_RS33085	0.45	+0.8
2,829,686	-		RR42_RS33085	0.45	+0.4
2,829,686	-		RR42_RS33085	0.45	+0.4
2,829,757	+		RR42_RS33085	0.48	+0.0
2,829,757	+		RR42_RS33085	0.48	+0.4
2,829,757	+		RR42_RS33085	0.48	+1.4
2,829,757	+		RR42_RS33085	0.48	-1.8
2,829,758	-		RR42_RS33085	0.48	-0.9
2,829,762	+		RR42_RS33085	0.48	-0.5
2,829,762	+		RR42_RS33085	0.48	+1.7
2,829,762	+		RR42_RS33085	0.48	+0.8
2,829,868	+		RR42_RS33085	0.53	-0.1
2,829,869	-		RR42_RS33085	0.53	-0.5
2,829,877	+		RR42_RS33085	0.53	+0.7
2,829,877	+		RR42_RS33085	0.53	+0.3
2,830,060	+		RR42_RS33085	0.61	+0.4
2,830,189	+		RR42_RS33085	0.67	+0.5
2,830,189	+		RR42_RS33085	0.67	+0.4
2,830,234	+		RR42_RS33085	0.69	+0.2
2,830,234	+		RR42_RS33085	0.69	-0.8
2,830,234	+		RR42_RS33085	0.69	+0.0
2,830,234	+		RR42_RS33085	0.69	-0.0
2,830,234	+		RR42_RS33085	0.69	+1.3
2,830,235	-		RR42_RS33085	0.69	+2.5
2,830,543	+		RR42_RS33085	0.83	+0.4
2,830,649	-		RR42_RS33085	0.88	+1.0
2,830,649	-		RR42_RS33085	0.88	-0.5
2,830,651	+		RR42_RS33085	0.88	-1.8
2,830,651	+		RR42_RS33085	0.88	-0.0
2,830,652	-		RR42_RS33085	0.88	-2.0
2,830,652	-		RR42_RS33085	0.88	+0.4
2,830,652	-		RR42_RS33085	0.88	+1.0
2,830,708	+				+1.1
2,830,708	+				-0.7
2,830,708	+				+1.3
2,830,709	-				+1.0
2,830,778	-				+0.5
2,830,837	+				+1.2
2,830,837	+				+0.5
2,830,837	+				+0.6
2,830,837	+				+1.7
2,830,838	-				-0.3
2,830,838	-				+0.4
2,830,840	+				+0.8
2,830,862	-				-0.5
2,830,911	+				+1.1
2,830,911	+				-0.1
2,830,911	+				-0.5
2,830,911	+				+0.3
2,830,912	-				+0.3
2,830,912	-				+0.3
2,830,912	-				-1.2
2,830,912	-				+1.0
2,830,915	+				+0.1
2,830,915	+				+1.0
2,830,915	+				-1.2
2,830,915	+				-0.8
2,830,915	+				+0.0
2,830,915	+				-0.5
2,830,915	+				+0.2
2,830,915	+				-0.6
2,830,915	+				-0.8
2,830,916	-				-2.3
2,830,916	-				-3.7
2,830,951	+				-0.1
2,830,951	+				-1.0
2,831,067	-				-0.0
2,831,079	+				+1.7
2,831,080	-				+0.7
2,831,084	+				-0.2
2,831,084	+				+0.4
2,831,085	-				-0.7
2,831,085	-				-2.1
2,831,170	-		RR42_RS33090	0.11	+0.6
2,831,334	-		RR42_RS33090	0.23	+0.5
2,831,667	+		RR42_RS33090	0.46	-0.7
2,831,669	+		RR42_RS33090	0.46	+0.0
2,831,669	+		RR42_RS33090	0.46	+1.7
2,831,669	+		RR42_RS33090	0.46	+0.3
2,831,669	+		RR42_RS33090	0.46	-2.3
2,831,670	-		RR42_RS33090	0.47	+0.5
2,831,670	-		RR42_RS33090	0.47	+1.5