Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31000

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,334,709	+		RR42_RS30990	0.69	-0.8
2,334,709	+		RR42_RS30990	0.69	+1.5
2,334,710	-		RR42_RS30990	0.69	-2.0
2,334,746	+		RR42_RS30990	0.78	-0.4
2,334,746	+		RR42_RS30990	0.78	+1.9
2,334,746	+		RR42_RS30990	0.78	+0.6
2,334,747	-		RR42_RS30990	0.79	+0.3
2,334,748	+		RR42_RS30990	0.79	+0.7
2,334,749	-		RR42_RS30990	0.79	-1.1
2,334,791	+		RR42_RS30990	0.90	+0.7
2,334,791	+		RR42_RS30990	0.90	+0.9
2,334,792	-				-2.3
2,334,792	-				+1.2
2,334,800	+				-0.8
2,334,801	-				-0.9
2,334,806	+				+1.1
2,334,807	-				+0.7
2,334,807	-				+0.6
2,334,807	-				+0.4
2,334,860	+				-0.7
2,334,860	+				-1.1
2,335,109	+		RR42_RS30995	0.29	-0.4
2,335,109	+		RR42_RS30995	0.29	-0.7
2,335,109	+		RR42_RS30995	0.29	-0.8
2,335,110	-		RR42_RS30995	0.29	-0.3
2,335,110	-		RR42_RS30995	0.29	+1.6
2,335,196	+		RR42_RS30995	0.41	+0.2
2,335,197	-		RR42_RS30995	0.41	+0.0
2,335,199	+		RR42_RS30995	0.41	-0.0
2,335,232	+		RR42_RS30995	0.46	-1.0
2,335,241	+		RR42_RS30995	0.47	-2.0
2,335,242	-		RR42_RS30995	0.47	+1.2
2,335,242	-		RR42_RS30995	0.47	-0.6
2,335,242	-		RR42_RS30995	0.47	-0.6
2,335,322	+		RR42_RS30995	0.58	+0.2
2,335,322	+		RR42_RS30995	0.58	+0.6
2,335,323	-		RR42_RS30995	0.58	-0.9
2,335,323	-		RR42_RS30995	0.58	-0.4
2,335,398	-		RR42_RS30995	0.68	+0.1
2,335,398	-		RR42_RS30995	0.68	-0.1
2,335,678	+				-2.0
2,335,767	+				+1.2
2,335,768	-				+0.2
2,335,783	+		RR42_RS31000	0.10	-0.1
2,335,784	-		RR42_RS31000	0.10	-0.7
2,335,813	+		RR42_RS31000	0.13	-2.0
2,335,813	+		RR42_RS31000	0.13	-1.3
2,335,814	-		RR42_RS31000	0.13	-0.6
2,335,823	-		RR42_RS31000	0.14	-0.2
2,335,823	-		RR42_RS31000	0.14	-0.5
2,335,826	+		RR42_RS31000	0.14	-1.1
2,335,826	+		RR42_RS31000	0.14	-0.1
2,335,826	+		RR42_RS31000	0.14	-0.7
2,335,827	-		RR42_RS31000	0.14	-1.3
2,335,827	-		RR42_RS31000	0.14	+1.4
2,335,827	-		RR42_RS31000	0.14	-1.0
2,335,843	+		RR42_RS31000	0.15	-0.4
2,335,927	+		RR42_RS31000	0.23	+1.3
2,335,928	-		RR42_RS31000	0.23	+0.4
2,336,089	+		RR42_RS31000	0.36	+1.8
2,336,126	-		RR42_RS31000	0.40	-3.3
2,336,162	-		RR42_RS31000	0.43	-0.1
2,336,162	-		RR42_RS31000	0.43	-0.4
2,336,162	-		RR42_RS31000	0.43	+0.0
2,336,367	-		RR42_RS31000	0.60	+0.0
2,336,448	-		RR42_RS31000	0.67	+0.4
2,336,464	+		RR42_RS31000	0.68	+0.7
2,336,464	+		RR42_RS31000	0.68	-0.1
2,336,465	-		RR42_RS31000	0.68	-0.6
2,336,656	+		RR42_RS31000	0.85	-0.3
2,336,657	-		RR42_RS31000	0.85	+0.1
2,336,689	+		RR42_RS31000	0.88	+0.9
2,337,309	+		RR42_RS31005	0.30	-1.6
2,337,309	+		RR42_RS31005	0.30	+0.9
2,337,310	-		RR42_RS31005	0.30	-0.6
2,337,310	-		RR42_RS31005	0.30	-2.5
2,337,310	-		RR42_RS31005	0.30	+1.0
2,337,310	-		RR42_RS31005	0.30	+0.0
2,337,313	-		RR42_RS31005	0.30	-0.5
2,337,360	+		RR42_RS31005	0.34	-0.5
2,337,399	+		RR42_RS31005	0.37	-0.1
2,337,592	+		RR42_RS31005	0.51	+0.4
2,337,592	+		RR42_RS31005	0.51	-0.7
2,337,593	-		RR42_RS31005	0.51	-0.8