Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29900

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,073,800	+		RR42_RS29895	0.50	-2.6
2,073,856	+		RR42_RS29895	0.53	+0.6
2,073,870	+		RR42_RS29895	0.54	+0.2
2,073,870	+		RR42_RS29895	0.54	+1.4
2,073,871	-		RR42_RS29895	0.54	+0.6
2,073,960	+		RR42_RS29895	0.60	+0.2
2,073,960	+		RR42_RS29895	0.60	-0.3
2,073,960	+		RR42_RS29895	0.60	+0.7
2,073,961	-		RR42_RS29895	0.60	-1.4
2,073,984	+		RR42_RS29895	0.61	+0.4
2,073,984	+		RR42_RS29895	0.61	-0.4
2,073,984	+		RR42_RS29895	0.61	+0.7
2,073,984	+		RR42_RS29895	0.61	+1.0
2,073,985	-		RR42_RS29895	0.61	+1.0
2,073,985	-		RR42_RS29895	0.61	+1.3
2,074,164	+		RR42_RS29895	0.72	+1.3
2,074,176	+		RR42_RS29895	0.73	+0.7
2,074,335	+		RR42_RS29895	0.83	-0.7
2,074,336	-		RR42_RS29895	0.83	+1.1
2,074,336	-		RR42_RS29895	0.83	-1.2
2,074,357	-		RR42_RS29895	0.84	-1.5
2,074,357	-		RR42_RS29895	0.84	+0.2
2,074,375	-		RR42_RS29895	0.85	+0.4
2,074,382	+		RR42_RS29895	0.86	+0.3
2,074,382	+		RR42_RS29895	0.86	+1.0
2,074,382	+		RR42_RS29895	0.86	+1.5
2,074,606	-				+0.1
2,074,606	-				-0.7
2,074,610	-				-0.5
2,074,610	-				-1.0
2,074,610	-				+0.2
2,074,613	+				+1.4
2,074,614	-				-0.0
2,074,641	+				-1.1
2,074,642	-				-1.1
2,074,642	-				+0.8
2,074,662	+				+0.4
2,074,662	+				+0.1
2,074,673	+				-0.7
2,074,715	+				-0.0
2,074,716	-				-0.0
2,074,716	-				+0.5
2,074,716	-				+0.8
2,074,716	-				+2.2
2,074,716	-				-0.4
2,074,801	-		RR42_RS29900	0.13	+0.1
2,074,837	+		RR42_RS29900	0.16	+0.0
2,074,838	-		RR42_RS29900	0.16	-1.2
2,074,838	-		RR42_RS29900	0.16	-0.2
2,074,920	-		RR42_RS29900	0.23	+0.5
2,074,920	-		RR42_RS29900	0.23	+0.2
2,074,951	+		RR42_RS29900	0.25	+0.1
2,074,951	+		RR42_RS29900	0.25	-1.8
2,074,952	-		RR42_RS29900	0.25	+0.3
2,074,952	-		RR42_RS29900	0.25	-0.3
2,074,952	-		RR42_RS29900	0.25	-0.2
2,074,952	-		RR42_RS29900	0.25	+1.3
2,074,965	+		RR42_RS29900	0.26	-0.5
2,075,197	+		RR42_RS29900	0.45	+0.3
2,075,197	+		RR42_RS29900	0.45	-1.6
2,075,197	+		RR42_RS29900	0.45	+0.6
2,075,197	+		RR42_RS29900	0.45	+0.8
2,075,197	+		RR42_RS29900	0.45	+0.8
2,075,197	+		RR42_RS29900	0.45	+1.2
2,075,197	+		RR42_RS29900	0.45	+0.8
2,075,197	+		RR42_RS29900	0.45	+1.0
2,075,197	+		RR42_RS29900	0.45	+0.2
2,075,197	+		RR42_RS29900	0.45	+0.6
2,075,198	-		RR42_RS29900	0.45	+0.2
2,075,198	-		RR42_RS29900	0.45	-0.4
2,075,198	-		RR42_RS29900	0.45	+1.0
2,075,257	+		RR42_RS29900	0.50	+1.4
2,075,257	+		RR42_RS29900	0.50	-2.0
2,075,257	+		RR42_RS29900	0.50	-1.0
2,075,257	+		RR42_RS29900	0.50	-1.4
2,075,257	+		RR42_RS29900	0.50	-1.1
2,075,258	-		RR42_RS29900	0.50	-0.8
2,075,266	-		RR42_RS29900	0.51	+0.6
2,075,266	-		RR42_RS29900	0.51	+1.8
2,075,317	+		RR42_RS29900	0.55	+0.2
2,075,378	-		RR42_RS29900	0.60	-0.1
2,075,414	+		RR42_RS29900	0.63	+0.6
2,075,465	+		RR42_RS29900	0.67	-0.5
2,075,514	-		RR42_RS29900	0.71	+0.4
2,075,606	+		RR42_RS29900	0.79	-0.3
2,075,727	+		RR42_RS29900	0.89	+0.5
2,075,728	-		RR42_RS29900	0.89	-1.4
2,075,756	-				-1.1
2,075,871	-				+0.6
2,075,871	-				-3.2
2,075,897	+				+1.5
2,075,897	+				+0.4
2,075,897	+				+0.7
2,075,897	+				-0.7
2,075,897	+				+0.8
2,075,937	+				+1.1
2,076,004	+				-1.0
2,076,004	+				+0.2
2,076,084	+		RR42_RS29905	0.16	-0.1
2,076,084	+		RR42_RS29905	0.16	-0.6
2,076,085	-		RR42_RS29905	0.16	+1.3
2,076,091	+		RR42_RS29905	0.17	+0.5
2,076,097	+		RR42_RS29905	0.18	-1.6
2,076,098	-		RR42_RS29905	0.18	+1.7
2,076,195	-		RR42_RS29905	0.27	-0.4
2,076,261	-		RR42_RS29905	0.34	-0.3
2,076,261	-		RR42_RS29905	0.34	+1.0
2,076,369	+		RR42_RS29905	0.45	+0.2
2,076,369	+		RR42_RS29905	0.45	+0.5
2,076,394	+		RR42_RS29905	0.48	+1.4
2,076,394	+		RR42_RS29905	0.48	+0.6
2,076,394	+		RR42_RS29905	0.48	+2.7
2,076,395	-		RR42_RS29905	0.48	-1.6
2,076,395	-		RR42_RS29905	0.48	-2.0
2,076,395	-		RR42_RS29905	0.48	-2.4
2,076,449	-				-0.6
2,076,449	-		RR42_RS29905	0.53	-0.1
2,076,449	-		RR42_RS29905	0.53	+0.8
2,076,452	-		RR42_RS29905	0.53	-0.0
2,076,452	-		RR42_RS29905	0.53	+1.0
2,076,648	+		RR42_RS29905	0.73	+1.3
2,076,649	-		RR42_RS29905	0.73	+0.2
2,076,700	+		RR42_RS29905	0.79	+0.8